Oncorhynchus tshawytscha (Chinook salmon): 112267794
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Entry
112267794 CDS
T05605
Name
(RefSeq) lumican
KO
K08122
lumican
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112267794
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class II
112267794
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Motif
Pfam:
LRR_8
LRR_4
LRRNT
LRR_9
LRR_14
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
112267794
NCBI-ProteinID:
XP_024301689
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Position
LG15:1410441..1414371
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AA seq
342 aa
AA seq
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MFPLRVPIFAVLVSLTVGQYDDYDYQPASQYGPSSANCAQECECPINFPTAMYCDSRNLK
FVPIVPSGIKYLYLQNNLIEEIKAGVFDNVTAELRWLVLDHNQITNEKVAKGTIDKLTGL
HKILFSFNKLTEAVIPPSMSLDELKMMNNQLSKFPAGSLAGMQNLTSVHLQNNELTSKAL
NGVFKGLNKLVAIDLTNNKLKKLPSGMPSSLETFYGDHNGISSIAAGDLKELPKLAYLRL
AYNQMADAGIPAGVFNVTSLIELDLSYNKLQSIPEINEQLEHLYLQANEINKFNLENICK
FSGPLNYSRLKHLRLDGNNITHADLPHDSSNCLRQASDIIFD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccctccgtgtccccatctttgccgtgctggtcagcctgaccgtgggtcagtac
gatgactacgactaccagccggcctcccagtacggcccgtccagcgccaactgtgcccag
gaatgcgagtgccccatcaacttccccactgccatgtactgtgactcccgcaaccttaag
tttgtgcccattgtgccctcaggcatcaagtacctgtacctgcagaacaacctgatcgag
gagatcaaggctggggtcttcgacaacgtcacggctgaactccgttggctggtcctggac
cataaccagatcaccaatgagaaagtggccaagggaaccatcgacaagctgaccggactt
cataagatcttgttcagcttcaacaaactgacggaagctgtgatccctccctccatgtct
ttggacgagctgaagatgatgaacaaccagctgtccaagttccccgcagggagtctggcc
ggcatgcagaacctgacctcagtccacctccagaacaacgagttgacctctaaagctctt
aatggggtcttcaagggcctcaacaagctggtggccatagacttgaccaacaacaagctg
aagaagctgccctcaggcatgcccagttcgctggagaccttctatggcgatcacaatggc
atcagcagcatcgccgccggggacctcaaagagctgcccaagctggcgtacctgaggttg
gcctacaatcagatggcggatgcagggattccggcgggcgtgttcaatgtgacgagcctg
atcgagctggatctgtcctacaacaagctgcagtccatccctgagatcaacgaacagctg
gagcatctctatctgcaggccaacgaaatcaacaagttcaacctggagaacatttgcaag
ttctctggccctctgaactactccagactgaagcacctgcgtctggatgggaacaacatc
acacatgccgacctaccccatgactcctccaactgcctgcgccaggcctctgacatcatc
ttcgactaa
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