Oncorhynchus tshawytscha (Chinook salmon): 112267835
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Entry
112267835 CDS
T05605
Name
(RefSeq) liprin-beta-1 isoform X1
KO
K27096
liprin-beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112267835
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112267835
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
SAM_PNT
DUF16
Gp37
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
112267835
NCBI-ProteinID:
XP_042153903
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Position
LG15:4647805..4684382
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AA seq
745 aa
AA seq
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MMSDASEMLAAALEQMDGIIAGSKAMDYSNGLFDCQSPTSPFLGSLRALHLLEDLRAALE
MMDQDEREGLRCQVPDTTADGLVEWLQQGQLTNGNGSAMIYQERLSRVESDKECLVLQVS
VLSDQVEVQGEKIRDLDMCLEEHREKLDATEETLQQELLSRSTLETQKLELMTEVSSLKL
KLTTVARDLRDSEGLYQEVNDLRFRVTDMENERLQCEKKLKSTKEELQTLQRQLEELRRL
KDQATQGVLTPDRTDGEKDVDVLRMKRAMESLTSANNDKDRRIEELQESITRYKKVQDLV
KDTLNEDDYDDIQDDRSPSIQVAMDTDRATLAVGEETGRSCDEIPSIAVFSELEQESLIQ
EPDTDSPPEVPPHSAGSLGHINSNTEQTTVEEPSPPSTSPSNPSSNESFGTKKARSSFGR
GFFKMRGGKRTSSAPNLDRSRSASAPTLAETERKGTDHLDLARALPHKPQGGDSSQTLPS
SPEAKKKSRGFMKFLGRLKRSHSTSLDLEETEFRRGGVRATAGPRLGWSRDLQHSADDVD
APFAQWSKEQVCVWLQEQGLGLHVAQAQQWIRSGFTLLQASQHDLEKELGIKQPLHRKKL
QLALQALGSEEDVSKAKLDHNWVTRWLDDIGLPQYKSQFDEGRVDGRMLHYMTVDDLLSL
KVGSVLHHLSIKRAIQVLRLNFYEPNCLRRRPSDENNITPGEISQWTNHRVMEWLRSVDL
AEYAPNLRGSGVHGGHGERGGWWSV
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgatgtccgacgccagcgagatgttggcagccgccttggagcaaatggatgggatcata
gcaggctccaaggccatggactactccaatgggctgtttgactgccagtcgcccacctct
cccttcctgggaagcctgcgggcgctgcacctgctggaggacctgcgggcggcgctggag
atgatggaccaggatgagagggagggcctccgctgccaggtccctgacactaccgccgac
ggcctagtggagtggctgcagcagggacaactgaccaacggaaatggctccgccatgatc
taccaggaacggctgtcacgggtggagagcgataaggagtgtctcgtcctccaggtgagt
gttctctcagaccaggtggaggtgcagggggagaagatcagggatctggacatgtgtctg
gaggagcacagagagaaactcgacgccactgaagaaacgctgcagcaggagctgttgagc
aggtcgaccctggagacccagaagctggagctgatgaccgaggtgtccagtctgaaactg
aagctgaccactgtggcgagagatctgagggatagtgaggggttgtaccaggaagtcaat
gacctgcggttcagggtgaccgatatggagaatgaaagactgcagtgtgagaagaaactt
aaatccaccaaagaggaactgcagactcttcagaggcagctggaggagctgaggagacta
aaagaccaggctacacagggagtgctgaccccagacagaacagatggagagaaagatgtg
gatgtgctgaggatgaagagggccatggagtccctgacgtcagctaacaatgacaaggac
cggcggatcgaggagcttcaggagtctatcacacggtacaagaaggtccaggacttggtg
aaagacacactgaatgaagacgattacgatgacatccaggatgacagatccccctccatt
caggtcgccatggatacagaccgggccaccctggcagttggggaggagacaggaaggagc
tgtgacgagattccatctattgcagtgttttcagagctggagcaggagagcctgatacag
gaaccagacacagacagtccaccagaagtcccaccacattcagcaggtagcctgggccac
ataaacagcaacacagagcagaccacagttgaggagcccagccccccatccacctctcca
tcaaaccccagcagtaatgaaagctttgggaccaagaaggcccgctcctcctttggacgt
ggtttcttcaagatgcgtggaggcaaaaggacgtccagtgccccaaatctggatcgcagc
cggagtgcgagtgcgcctacgttggctgagaccgagcgtaagggcacagaccacttggac
ttggctcgtgccctgccacacaaacctcagggaggagacagcagccagaccctaccttcc
tcaccagaggccaagaagaagtccagaggctttatgaagttcttaggcaggctgaagaga
agtcactccacctcgctagacctggaggagactgagttcaggaggggaggagtcagagcc
acggccggcccccgactgggctggtcacgtgacctgcagcacagcgccgatgatgtggac
gctccctttgcgcagtggagtaaggagcaggtgtgtgtgtggctgcaggagcagggcctg
gggctgcacgtggctcaagcccagcagtggatccgctcaggattcaccctgctgcaggcc
tcccagcacgacctggagaaggagttggggatcaaacagcccctccacaggaagaagctg
cagctggctctccaggcactgggatcagaggaggatgtcagcaaggccaaactggaccac
aactgggtgaccagatggcttgatgatattggtctgccacagtataagagccagtttgat
gaggggagggtcgatggacgaatgctacactacatgactgtggatgacctgctgtctcta
aaggtgggcagtgttctccaccacctcagcatcaagagagccatccaggtcctccggctc
aacttctacgagcccaactgcctccgccgacggccctctgacgagaacaacatcacacca
ggggagatctcccagtggaccaatcacagagtgatggagtggctgagatcagtggacctg
gctgagtacgctcctaacctgaggggcagcggtgtgcacgggggtcatggtgagcggggg
gggtggtggtctgtttga
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