Oncorhynchus tshawytscha (Chinook salmon): 121840311
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Entry
121840311 CDS
T05605
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
121840311
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
121840311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Peptidase_S55
7TM_GPCR_Sri
Motif
Other DBs
NCBI-GeneID:
121840311
NCBI-ProteinID:
XP_042158762
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All DBs
Position
LG21:complement(7334881..7337510)
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AA seq
808 aa
AA seq
DB search
MGDCWSTGRGGGWQVLFFILCLCALDSVTGQARYTIPEEQAEGSIVGNIGRDLGLEVKRL
VSGKARIITRGTRQYVDLNRDKGILVVKERIDREELCGQTTPCSFSFELIIENPIQLYRV
TVEVRDINDNTPSFPKEEISLEISESAVSATRFSLESAVDPDVGVNGIQNYYLKPTDHFQ
LEVHSLSNGGKYIEMILQHPLDREKQETLSLVLIATDGGEPQRSGTVRIHITVLDANDNA
PVCGQPVYKADVKESSPKGTLITTVSANDADKGINGEVTFAMAHVSKEAKELFELNVSTG
EIKLVAKVDFEKTNNYQLNVQAKDHWGLADTCKVVIQITDENDNVPTIQLMSFSHSISED
SPLGTTVAVINVEDADSDGNGIVLCSINADIPFQIEPSLTDYYTIVTESPLDRETVSEYN
ITIKVSDEGSPPLSSSKNITVKVSDVNDNPPKFVQPEYSKSIQENNSPGFSIFAVRASDA
DWGQNARVSYFLDDKQVNGLAVSSFVSVNSENGAIHAVRSFDYEQIKSFDFNVTARDGGS
PPLSSVVAVRILVQDQNDNAPQVLYPVQTTSSLVAEMVPRSADVGYLVTKVVAVDVDSGQ
NAWLSYKLQKATDRALFEVGLQNGEIRTIRQVNDKDAVKQRLTVVVEDNGQPSRSATVNV
NVVVADSFPEVLSEFTDFTHDKEYNDNLTFYLVLALAVVSFLFITCLVVIISVKIYRWRQ
SRVLYHSNLPVIPYYPPRYADTLGTGTLQHVYNYEVCRTTDSRKSDCQFARPCSQNVLIM
DPSSTGTMQRMQNEQNILDEPDSPLEVS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgggtgattgctggtcgacaggccgtggaggcggatggcaagtactgtttttcattctt
tgtctatgcgccctagattccgtgactgggcaggcacggtataccatacccgaggagcag
gcagaagggtcgatcgttggaaacattggtagagatttaggcttggaggtgaagaggcta
gtgtccggtaaagctcgtattataaccagaggaactcgacagtatgtagatcttaaccga
gacaaagggattctcgttgttaaagagcgaatcgaccgagaggagctatgcggacagact
accccgtgtagcttcagctttgagcttattatagaaaaccccattcagttatatcgggtt
acagtcgaggttcgcgacattaacgataatacaccatcatttccaaaggaagaaattagt
ttggaaatcagtgaatctgccgtgtcagctacgcgcttttccctggagagcgccgtcgac
ccagacgttggtgttaacggtatacaaaattactatctcaaaccgacagatcatttccaa
ttagaggtacacagcctatccaacggtggtaaatacatcgagatgattttacaacacccc
ctggacagagagaagcaggagaccctctcgttggtgcttatagctacagacggaggcgag
cctcagaggtctggtactgtccgcatccatattacagtgctggatgctaacgacaatgca
ccagtgtgtggccaaccagtttataaagcagacgtcaaagagagctctccgaaggggact
ttgataaccaccgtcagtgcaaatgatgcagataaaggaataaacggagaagtaactttt
gctatggctcatgtctccaaagaagctaaagaactgtttgagctgaacgttagcactgga
gaaattaaattggtagctaaagtagattttgaaaagacaaacaattatcaattaaatgta
caggcaaaagaccactggggtcttgccgatacttgtaaagtagttatacaaattactgat
gaaaacgacaatgtccccacaatacagctcatgtcattttctcattcgatttccgaggat
tctccccttggtaccactgtagctgttattaacgtagaggatgcagactcggatgggaac
ggtatcgttctgtgctctattaatgcagatattccattccaaatagagccatcgttaact
gattattatacaatagtcaccgaaagtcctttggatagagaaacggtgtcggagtacaac
atcactattaaagtttcagatgaaggctctccgcctctctctagcagtaagaacataaca
gttaaagtatcagatgtcaatgacaacccaccaaagtttgttcaacctgaatatagtaaa
tctattcaggaaaacaactcgccagggttttcgatatttgcagtgagggcaagtgatgct
gattggggccaaaatgctcgtgtctcctactttcttgatgataaacaggttaacgggttg
gctgtgtcctctttcgtctcagtaaactcagaaaatggtgccatccatgctgttaggtca
ttcgactacgaacaaatcaagtcgtttgacttcaacgtcactgcacgtgatggggggtct
ccccctctcagttcagtggtggctgttagaattttggtccaggaccagaacgacaacgcg
cctcaggttctgtacccagtccagactaccagctctctggtggctgaaatggtgcctcgt
tcagcagatgtgggctatcttgttactaaagtggtggctgttgatgtggactccggacag
aatgcctggctctcgtataaactgcagaaagcgacagacagggcgctgtttgaagtgggc
ttacagaatggagaaataagaactatacgacaagtcaatgataaagatgctgtgaaacaa
aggctcactgttgtagtggaggacaatgggcagccctctcgttcagctacagtcaatgtt
aacgtggtggtggcggacagcttccctgaagtgctctcggagttcactgactttacgcac
gacaaggagtacaacgacaacctgactttttacttagtcttggctttggctgtagtctca
tttctattcatcacatgtttagtggttattatatcagtgaaaatatacagatggagacag
tctcgtgtcctctatcattccaatctcccggttattccgtattatccaccgcgttacgca
gacactttggggacaggaactctacagcacgtgtacaattacgaggtgtgcaggacgact
gactccagaaagagtgactgtcagttcgccagaccctgtagtcagaacgtactgataatg
gaccccagttctacagggacgatgcagcggatgcagaacgaacagaacatcctggatgaa
ccagactccccactagaggtgagttaa
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