Oncorhynchus tshawytscha (Chinook salmon): 121840986
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Entry
121840986 CDS
T05605
Name
(RefSeq) E3 SUMO-protein ligase RanBP2-like
KO
K12172
E3 SUMO-protein ligase RanBP2 [EC:2.3.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121840986
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121840986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
121840986
03110 Chaperones and folding catalysts [BR:
otw03110
]
121840986
04121 Ubiquitin system [BR:
otw04121
]
121840986
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121840986
Chaperones and folding catalysts [BR:
otw03110
]
Protein folding catalysts
Peptidyl prolyl isomerase
Cyclophilin
121840986
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121840986
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ran_BP1
Zn_ribbon_RanBP
Pro_isomerase
IR1-M
WH1
zf-C3HC4_4
zf-B_box
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
121840986
NCBI-ProteinID:
XP_042162379
LinkDB
All DBs
Position
LG26:29879837..29899881
Genome browser
AA seq
2648 aa
AA seq
DB search
MSDAMDLMNCSICLDLLKDPVAIPCGRNYCMGCIEDCWNQGDLNGVYSCPDCRKTFTPRP
VLNKNTLLIELVEKLKNTGLHAASPAHCYAEPGDVECDFCIGRKLKSVKFCLVCLASYCE
THLQPHYEVAPLKKHKLVKASTQLHEMICSHHDKLLEVYCRTDQQCICYLCTVDEHKGHD
TVSAAAERTEKQKQLDEKQQILKQRIQKTEMGVFGARQSIQFVKSSAQAAVEDSERIFPE
LIRSIERRSSKVKQLIKAKEMAEVSRTEGHLKQLEEEVVELRRKDAELEQLSHTEDHIHF
LKSFQSFSVPPGIEGVPSTFNPHVSIEDVKKSLSELQDRMENVFNEEMVKISRKVGYAFH
LASSPMRKILFCFGECTSGFSFQPVISPSKSLAKLNRIRVSVDEDQDVTQDKQATKTKVF
TGGSASVGGFTFRFGADSQPTTNPPIPESGYFIKPFVVPVQPAKSIERKPVDFVKMSFGQ
PIPAEPPKVLSFGAEIVAQSTPSSAAFKFNSNFKSNDGDFTFMSKNSENLLKLLMSDIPT
KLEGPSEGKPQYPPSLGGILTFGTKSAPGFSFNDSIQIQDKPNPFGKFDQPFSFTDVTTP
VFGLANTAEEEKGAESNNNSTHVEEDEDGPHFEPIVPLPDKVDVKTGEEEEEEMFCNRAR
MFRFDAETKEWKERGIGFVKILKHNTSGKVRLLMRREKILKVCANHYITPDMLLKTNAGS
DKSWVWNAVDYADEEPRLEQLAIRFKTEVKALLFKTKFEEAQKIVPKSPKKQQDQLCRKK
KYPKHSAPEATNLGAQFAKKYGEWDCNVCCVRNAAKVMQCVACQTANPNAPSKLDSALAT
DIKGFTSGAASVGGFTFGFGADSSKDTSSAGSIGKGLGSFGAQTPSSFTVGTSGTTYIPA
AGFGAQFGKRQETTKVAAESKPSTMPFGSGFGVQFSMNPGQWDRDTCALRNEAFANSCLS
CQTPNPSGKPAAGAPALATLSTGSGFGAQFSKKLGQWDCDTCVVRNEASSSSCVSCQTPN
PSAKSTVEVAPTTEPTVSDFGADFSRKDGQWDCDTCLVRNDASASKCVSCQTPNPNASSS
SLRAMFARQEGQWDCDACLVRNNNSASQCVSCQMPNPNVKSIATAANSRSSFSFNFGSQT
ASTQPTGTGFKANFNGDSSLQFGTGKVDKSSPASFKFETPPQAESSTPSAAGFSFTMPIP
AGGFKFGTQETAKETLPAETQTPASGSASMFLKNIAEQHREKESGVSVYASVLSVDKTGQ
DENPLFIGKPNDFSFADLAKNSQGDFQFGQTDSNFKGFTRAGEQLFTSLQSNQRADTSAD
QDEEGIYKTEDNDDIQFEPVVQMPEKVDLVTGEEDEQAVYSQRVKLFRFDGDISQWKERG
VGVLKFLKNATNGRLRVLMRREQVLKVCANHWITTTMNLKPLAGSDKAWMWLANDFSDGD
ARLEQLAAKFKTPELAEEFKLKFEECQRLLLDIPLQTPHKLVDTGRTAHIIQKAEEMKSC
LKDLKSFLTDDKTKIKEDDSHANITTASNTSGLNIKPHAENTGPTLEWDNYDLREEALDD
SADTSVYALPLASSPIRKNLFCFGESTEGFNFSFQPVVSTAKSLAKMNQSGVSADEEQDI
SQEEERDGLYFEPVVPLPDLVEISTGEENENVCFSHRAKLYRYDKDLNQWKERGIGDLKI
LQHCDTKRVRLIMRRDQVLKICANHWVTSSMKLEPMKGAEKAWVWSAIDFAEVTKGNVEQ
LAVRFKLKDVANSFRDIFDQAKTAQENEILVTPITSSETLTQEEAIATGTTMCGQAAVAI
LEETTTERTELYHETLHTPDCKSSTGTPHSPLNLSRMVMSPPKFLFGTDSLQKFFGSSPP
SSKEDSSPESSKVKDSGRTSQPLTAFKISEKDEDFETAVKALNGKLYRDPPEREAASAGS
AGQAEAGVEGLDPEVEVLWEKRPTPEEEQKARNLQLPSTFFCGVGSDSEAEKDKPEDFET
EFRKAQEALDAERSSDPEDVSSSTCDTVPEQQVPDQYPSSQEQASDQSGAEVQSTPAEEQ
VPDQSLTIQEAEIPTPGSQEQATEQSVTIQDADIQYSTAEEQVPVQSVTIQEADVQSSTA
EEQVSVQSLTIQEAEVQSTTKEQQTPDQSDSTSTPSQTAVSCSREQATTPNPSEKPAASA
PALVTPSFSFGFGAQFGKKPGQWECDMCLVRNEESASSCVSCQTLNPAASSGEQAPDQSD
STPAAISSSPIDLSAKKTSDPDSNTTFTTTTTQDAPNSFGSLGFSALGGEGLSFADLAQN
TGGLFAFGKQDSNFSWANAEATLFGAAAPAKAEGGEEECDEGDTNNVGIDFEPIVSLPEV
ETKSGEEDEEILFKERTKLYRWERDLGQWKERGVGDIKILFHPDKRFYRVLMRREQVLKV
CANHTICQSMELKPMNTSNQALVWTATDFSEGEGKVEQLAAKFKTAELAESFRKIFCECQ
SRMSQSEASTLSSPQLSRVQEHSRDTNPQVYLSISADDEPLGTVTIELFSHIVPKTAENF
RALCTGQKGFGLRNTVFHRVVPDFMCQGGDITNQDGTGGKSIYGHKFEDENFDVRHTGPG
LLSMDNHGRDTNNSQFFITLKKAEHLDFKHVAFGFVREGMDVVRSMGELGTKTGKPSKKI
VITECGQL
NT seq
7947 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgcaatggacttgatgaattgttcaatttgcctggatctactgaaagatccg
gtggctattccctgtggacgcaactactgtatgggctgtattgaggactgctggaatcag
ggtgatcttaacggtgtctacagctgcccagactgcagaaagacctttaccccgaggcct
gttctgaacaaaaatactctactgattgaattggtggagaaactgaagaatacaggacta
catgctgcttctcctgctcactgttatgctgaacctggagatgtggagtgtgatttctgc
attgggagaaaactcaaatctgtgaaattctgtctggtgtgtctggcctcttactgcgag
actcatctacagcctcattatgaagtagctccattaaagaagcacaagctggtcaaagca
tccacacaactccatgagatgatctgctctcatcatgataaactgctggaggtttactgc
cgtacagatcagcagtgtatctgttatctttgtacagtggatgaacataaaggccatgat
acagtgtcagctgcagcagaaagaactgaaaaacagaaacagttggatgagaaacagcag
atattaaagcagagaatccagaagacggagatgggggtgtttggggcgagacagtctata
cagtttgtcaagagctctgcacaggcagcagtggaggacagtgagaggatctttcctgag
ctgatccgctccattgagagaaggagctctaaggtgaagcagctgatcaaagccaaggag
atggctgaagtgagtcgaactgagggacacctgaagcaactggaggaggaggtggttgag
ctgaggaggaaagacgctgagctggagcagctctcacacacagaggatcacatccatttt
ctcaagagtttccagtctttctctgtcccgccgggaattgagggcgtacccagcactttt
aaccctcatgtctccattgaggatgtcaagaagtccctctctgaactacaagaccgaatg
gagaatgtattcaatgaggaaatggtaaagatatctagaaaagttggatatgcctttcat
ttagccagtagcccaatgaggaaaatcctcttctgctttggagaatgcacctctggcttc
agcttccaaccagttatcagtccctccaagtccctggccaagctgaaccggatcagggtg
tctgtggacgaggaccaggacgtgactcaagacaaacaggctactaaaaccaaagtcttt
actggtgggtcagcttcagtgggaggatttacttttagatttggggccgactctcagccc
accaccaaccctcccatccctgagtctggctacttcatcaagcccttcgtcgtacctgtc
caaccagctaagagcattgagcgaaagcctgtggactttgtgaagatgtcttttggccag
ccgatccctgctgagcctcctaaagtgcttagctttggtgctgaaatagtcgcccagtcc
actccatcatccgctgcctttaaattcaactccaactttaaatccaatgatggggacttc
accttcatgtccaaaaacagtgagaacctgttgaagcttctgatgtcagacattcccacc
aaattagagggcccctcagaggggaagccccaatatcctcctagcctgggagggatactt
acctttggcactaaaagcgctcctgggttctcctttaatgactcaatccagatccaggac
aaaccaaacccatttggaaaatttgaccagccatttagtttcactgatgtaaccacaccg
gtatttgggctggcaaacacagcagaggaggagaagggagctgagagcaataacaacagc
actcatgtggaggaggacgaggatgggcctcactttgagcctattgtgcccctccctgac
aaagtagacgtgaagactggagaggaggaagaggaggagatgttctgtaacagggccagg
atgttcagattcgatgcagagacaaaagagtggaaagagagaggtatcggctttgtcaaa
atcctaaagcacaatacatcagggaaagtgcgtctactgatgaggagggagaagattcta
aaggtctgtgctaaccactacatcacgccagatatgctcctgaaaacaaacgctggatct
gacaagtcctgggtctggaatgctgttgattatgcggatgaggaaccaaggcttgagcaa
ctggccatccggttcaaaacggaagtcaaggcattgctcttcaagacaaaatttgaagag
gctcagaagatcgttcccaaatctccaaaaaagcagcaagatcagttatgtaggaaaaaa
aaatatcctaaacactctgccccagaggcgacaaacttaggtgcccagtttgcaaagaag
tacggggagtgggactgtaatgtgtgctgtgtaagaaatgcagctaaagttatgcagtgt
gttgcctgccagactgccaaccctaatgccccatcaaagctggacagcgcactagctact
gacatcaaagggtttactagtggggcagcttcagtgggaggatttacttttggatttgga
gctgactcgtcaaaagacaccagcagcgcaggatctattggaaaaggattagggtctttt
ggagctcagacaccctcctcctttacggttggaaccagtggcaccacttatatacctgct
gctggttttggtgcccagtttggaaagaggcaagaaaccacaaaagttgcagcagaatca
aagccctcaaccatgccatttggctctggatttggtgtgcagttcagcatgaatccaggt
cagtgggaccgcgatacatgcgctttaagaaatgaggcatttgcaaacagttgtctctct
tgtcaaactccgaacccttcaggaaaacctgctgctggtgccccagctttggcaaccctc
tcaactgggtctggatttggtgcccaattcagcaaaaagctagggcaatgggactgtgat
acatgcgttgtaagaaacgaggcttcttcaagcagttgtgtttcttgtcaaactccgaac
ccttcagcaaaatcaacagtagaggtagcaccaacaacagagccaacagtgtcagacttt
ggtgctgatttttcaaggaaggatggacaatgggactgtgacacctgtctagtgaggaat
gatgcatctgcctctaagtgtgtttcctgccagacacccaaccccaatgctagcagctcc
tctcttagggccatgtttgccaggcaggagggacagtgggactgtgacgcatgtctagtc
agaaacaacaactctgctagtcaatgcgtctcctgtcagatgcccaatcccaatgttaag
agcatagccacagccgccaattccaggtcatccttcagctttaacttcgggagtcagact
gcctctactcaacccacaggcactgggtttaaagcgaacttcaacggtgacagctctttg
cagtttggcacaggcaaagttgataaaagttcccctgcatccttcaagtttgagacccct
cctcaggctgaaagcagtacccccagtgctgcaggcttctctttcaccatgcccatccca
gcaggtggctttaagtttggcactcaggaaactgcaaaggaaaccctaccagctgaaact
cagactcctgcttcagggtctgcgtcaatgttcctgaagaatatcgcagagcagcacaga
gagaaggaatctggtgtcagtgtatatgcatcagtactgtcagtggacaagacgggtcag
gatgaaaatcccctcttcattggcaaacccaacgacttcagttttgcagacttggctaaa
aactcacaaggagacttccagtttggtcagacggactccaatttcaaaggcttcacccgc
gctggtgagcagctgttcacatcccttcagtcaaaccagagggcagacacctcagctgac
caggatgaagagggcatatacaagacagaggataatgacgatatccagtttgagcctgtg
gtccagatgccagagaaagtggacctggtcacaggagaagaggacgaacaggccgtctac
tcccagagagtgaagctcttcaggtttgacggagacatcagccagtggaaggagaggggt
gttggggtcctcaagttcctgaagaacgccaccaatggcaggctcagggtgctgatgagg
agagagcaggtcctgaaggtgtgtgccaaccactggatcaccaccaccatgaacctgaag
cccttggctggctccgacaaggcctggatgtggctggctaatgacttctctgatggagat
gccagactggagcaactcgctgccaagtttaaaacccctgagctggctgaggagttcaag
ctgaagtttgaggagtgtcagaggctcctgttagacatcccactacagactcctcacaag
cttgttgacaccggtagaactgcacatatcatccagaaggcagaggagatgaagtcctgc
ttgaaagatcttaaatctttcctgaccgatgacaaaaccaagatcaaggaggacgacagc
catgctaacatcacgacagccagtaacacctctggtcttaatatcaagccccacgcagag
aacactggccctaccttagaatgggacaactatgacctgagagaggaggctctggacgac
agtgctgacacctctgtctacgccttacccctggcaagcagcccaatcaggaagaacctc
ttctgctttggagaatccacagagggcttcaacttcagcttccagcctgtcgtcagtacc
gccaagtcgctggccaagatgaaccagagcggggtgtctgcggacgaggagcaggacatt
agccaggaggaggagcgggacggcctgtactttgagcctgtggttcccctgccagacctg
gtggagatctccactggagaggagaatgaaaacgtgtgtttcagccacagggcaaagctg
tatcgctatgacaaagacctgaaccagtggaaagagaggggcatcggagacctcaagata
ctgcagcactgcgataccaaacgagtcagactcatcatgaggagagaccaagtcctgaaa
atctgtgccaaccattgggtcacatcttctatgaagttggagcccatgaagggtgctgag
aaggcctgggtctggagcgctattgactttgccgaggtaactaagggaaatgttgagcag
ttagctgtcagattcaaactgaaggatgtggctaactccttcagagatatatttgaccag
gctaaaactgcccaagagaatgagattctggtcactccaatcacctccagtgagaccctt
actcaggaggaagcaatagcgacggggacaaccatgtgtggacaagctgctgtggccatc
ctggaggagaccaccacagaacggacggagctgtatcatgagactttacacacccctgac
tgtaagtcctccaccggtactccacatagccctctcaacctctccaggatggtaatgtcc
ccacccaagttcctctttggaacagactctctccaaaagtttttcggcagcagcccacca
tcatccaaggaggatagttctccagagagctccaaggttaaagacagcggtcggacctcc
cagcctttaactgcattcaaaatctcagaaaaggatgaggactttgagacagcagttaaa
gccctgaatggaaaactgtaccgggatcctcctgagagggaggctgccagtgcaggttct
gcaggccaggccgaggcaggtgttgaaggtctggacccggaggttgaggttttatgggag
aagaggccaactccagaggaggaacagaaagccaggaacctgcagctgccttcaaccttc
ttctgtggtgtaggcagcgacagcgaggcagagaaggacaagccagaggactttgagaca
gagttccgcaaagcacaggaggctctggatgctgagagaagctcagaccctgaggatgtg
tcctccagcacctgcgatacagtgccagaacaacaggtcccagaccagtaccccagcagc
caggaacaggcttcagatcagtctggggcagaagtccagtccactccagcagaagaacag
gtcccagatcagtcattaaccatacaggaggctgaaatcccaaccccaggtagccaggaa
caggccacagaacagtcagttaccatccaggatgcagacatccaatattctacagcagag
gaacaggtcccagttcaatcagtaaccatccaggaggcagatgtccagtcctctacagca
gaagaacaggtctcagttcagtcattaaccattcaggaggcagaggtccagtccaccaca
aaggagcagcagactccagatcagtcagactccacttcaacaccatcgcagactgccgtc
tcctgcagcagggagcaggctaccactccaaacccttcagaaaaacctgctgctagtgcg
ccagctttggtaaccccctcatttagttttggatttggtgcacagtttggcaaaaagcca
gggcagtgggagtgtgacatgtgtcttgttagaaatgaggagtctgcaagcagttgtgtt
tcttgtcaaactctaaaccctgctgccagcagcggggaacaggctccagatcagtcagac
tctactcctgcagctatcagcagcagccctatagacctttctgccaagaagacctctgac
cctgactctaatactacatttactacaaccactactcaggatgctcctaactcatttggc
tcattgggcttcagtgctctaggaggggaagggttatcctttgctgatctggcacagaac
actggggggttatttgcctttggaaaacaagattccaacttctcgtgggcgaacgccgag
gctacgttgtttggagctgcagccccagccaaagctgagggaggggaggaggagtgtgat
gaaggggacactaataatgtgggcattgactttgaacccatagtctctctaccagaggtg
gagactaagtcaggggaggaggatgaggagatcctgtttaaggagcgtaccaagctgtac
cgctgggagagagacctgggccagtggaaggagaggggtgtgggagacatcaagatcctc
ttccaccccgataagaggttctaccgggtgctaatgaggagggagcaggtgctgaaggtc
tgtgccaatcacaccatctgtcagagcatggagctcaaacccatgaacacctctaaccaa
gccctagtctggacagctactgacttttcagagggtgagggtaaggtggaacagttggca
gccaagtttaagactgcggagctggccgagagtttcaggaagatcttctgtgagtgtcag
agtcgaatgagccaatcagaggcctccaccctctcctccccccagctgtccagggtacag
gaacattccagagacaccaatccccaggtgtacctctctatctccgctgacgacgagccc
ctgggaacggtcaccatagaactgttctctcacatcgtccccaagacagctgagaacttc
agagcactgtgtacaggacagaaaggcttcgggctgcgcaacactgtcttccacagggtc
gtacccgacttcatgtgtcagggtggagacatcaccaaccaggatgggacaggagggaaa
tccatctacgggcacaagtttgaggatgagaattttgacgtgcgccacacaggcccgggc
ctgctgtccatggacaaccacggccgagacaccaacaactcccagttcttcatcactttg
aagaaggctgagcacttggacttcaaacacgtggcctttggcttcgtcagagagggcatg
gatgtggttcgcagcatgggagagctgggcaccaagactggcaaacccagcaagaagatt
gtcatcaccgaatgtggacaactgtag
DBGET
integrated database retrieval system
