Oncorhynchus tshawytscha (Chinook salmon): 121841178
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Entry
121841178 CDS
T05605
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 7-like isoform X1
KO
K14437
chromodomain-helicase-DNA-binding protein 7 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
121841178
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121841178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
BRK
Chromo
ResIII
DEAD
HDA2-3
MUN
Motif
Other DBs
NCBI-GeneID:
121841178
NCBI-ProteinID:
XP_042163900
LinkDB
All DBs
Position
LG28:28492804..28607716
Genome browser
AA seq
3049 aa
AA seq
DB search
MSTPEPKAKGTGSPSLTEEPYGAPRLAAGRAGLHSSSNRHPPRPPPTSSTAPLGPRPPPT
SSTAPLGPRPSHQQHGPSGPQAPSHQQHDPSGPQDHGHCMGPYMGRSDYATMQGHPGQTQ
TPPRINHFPPGMGQEPNHYMGHVGLQQNSSMTGHPAQQQQPPQQFLHRPGQGPVHTQDHM
ASHTSHQQHQGLAGRPHQNMGFNMHGQAASPGAVTSSGPYPPYPQYGNLNQGLAGSAGMS
PGMSLSSTSNNNSSASGPMGPDQVQCYPNAGGGPQCYPDLQVHQQPVHPNQITGQPMHPS
QAQATPHKQPRLPTPPHGSYSSPTSMSPMKGMGTTAVTPPPQQVRPPSAGLAPEVGVYPG
VPLQAPNSIAPPQRNTTPLGVQQPQHHPQHLSHPQQHPHMPLSQQLYQGMSPNQRGPLDQ
VRPPGPMAHGEHPGPQDQQLLTPQQQAPKSGLQPPPMAFQQQVHPAPTALPPSQAQTHLD
GPHHQSSPPNQPPWVPAGHQSLPTPQKVPHIQYSTSSEMTASDRTPASGANLQPANRDKK
PIEQKPKKKKAKVMVEGEKKPKKKKGGCIEECGEEGKRKVGDGPWAEVNCLTGALEESLV
VKTKKKPKEPKEPKTPKTPKTPKEPKEKAKSTTPKVKMPKKPRSTKKVESAEGSVSSVKE
TKRMREPSVSSDVEKSPPGPSDEDNDDDGVQKRRSSRQVKRKRYTEELEFRISDDDGDVS
PAPKSPFNTSEQQEVETEGPVVEKILSIRMGKKEMESGEKMEVEEFYVKFKSFSYLHCRW
ADLEDLEKDKRIHQKVKRFRAKQALPTFVTEMDDEPFNPDYVEVDRVLDVSESTDENGEP
VKLYLVKWCSLPYEDITWELKADIDQAKIDEFEAVAARQPKTKRVERPPTENWHKSESSR
DYKNDNALREYQLEGVNWLLFNWYNTRNCILADEMGLGKTIQSITFLYEIYLKGIHGPFL
VIAPLSTIPNWEREFRTWTELNVIVYHGSQASRKTIQAYEMNYRDMQGRVIKGAYKFHAV
ITTFEMILTDCPELRSVSWRCVVIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNT
VEELFSLLNFLEPERFPSENTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP
KEETIIEVELTNIQKKYYRAILEKNFSFLSKGGPGGGGGAWGGGGAQVPNLLNTMMELRK
CCNHPYLINGAEEKILDDFRENHHAEMPQFHLQAMIQAAGKLVLIDKLLPKLKAGGHRVL
VFSQMVRCLDILEDYLIQKRYPYERIDGRVRGNLRQAAIDRFSRPGSDRFVFLLCTRAGG
LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSYEREMFDKASL
KLGLDKAVLQSMSGRENAANGVPQLSKKEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQI
LLRRTQTITIESEGKGSTFAKASFVAAGNRTDISLEDPDFWQKWAKKAELDMEAINGRNT
LVIDTPRVRKQTRHYSSMKEDELAEFSELESDGENEKPLTKLRRPQDRAHGYPRSECFRV
EKNLLVYGWGRWGDILSRGRFKRPLQEQDVETICRALLAYCLLHYRGDENIKRFIWDLIT
PSEDGQSRTLTNHSGLSTPVPRGRKGKKGKPAPPAPPQLPRAEWLASCNPDLLLQEDSYK
RHLKHHCNKVLLRVRMLYYLRQEVIGDHADRILEGTDSSEMDIWIPQPFHAEVPADWWDS
EADKSLLIGVFKHGYEKYNSMRADPALCFLERVGMPDAKAIAAEQRGADMMADGLEGEDE
DPEYKPLRMTFKDEMEDFANSPLDDKDETVDIESGESKPGENVAGSRGAGSLYWPAASAL
TARLRRLITAYQRTHKREQLRQEAMARPDGRRRRRPREHLFSMVTDGGAYVQEDGAFMAE
GSPYMAMGGAFIPEVPVLPAEGGAAFKERRQRWTRREESDFYRVVSTFGVIYDMDRQLFD
WTQFRAFARLDKKSDESLEKYYFSFVAMCKRVCRMQVKANTELPDPTLIIDPITEERASR
TLYRIELLRRIREQVLPNPLLGERLRLCQPSSDLPEWWACRRHDHDLLLGASKHGVSRTD
YHILNDPALGFLEAHRKFTKGASAGVPQPPRDAALSTASSSSTEQATATAGAEKSLPVQE
EEEGKEMKEEGDDIPCTKPEKPDEGKEEEMEAKKEEKAGSPKKVKDEEEDGEEKVEVTGD
ADGETSKEAKPEKEYKAPTEETKDQDKKLDFQEKPESPKASEEQGTKKDEKEGSPAKSPK
PVAEKGPDEEKMEEDDRSEKSSQAEAAATSEQKNFDEESNASLSTTARDETRDGFCPEEE
PSAIPALQERATSSFWPKDRVMINRMDNICDAVIKGKWPANRRQFFDSPGLLPGYPGPMT
SESPMPRQSLAELSMAAGAQTNFSGSEDLTLSPQVNEDALSISLPKQRRRRRRKVEMEAE
RAAKRRNLMDMVAQLRESHAAESQSQAMDLTKGILHQHHKSSAPSPASYSSSMVSPAALK
AQMELLQAATPSRHRANCSLAEADLPTRRRRGRRKNVEGLELLFMRGATEDSERTKASVE
GLQMPPRSHRHNIPSTSARVPSVSAMEDREAGTPSNKDLSDWLRQHPTYTMDMPTAYTPK
SEETLLSSQFPKPKQKRHRCRNPNKIDINTLTGEERVPVVNRRNGRKMGGAMAPPMKDLP
RWLLENSDFAVAPDWTDIVKQSGFLPEAMFDRLLTGPLVREEGVRRRGRRPKSEIAKATA
AASAASSGGLNPLLINGLFGGMDLTSLQGLQSLQSLQLQLMGFPGMGGADSKHASAMLPL
MLPGILPNMFGLGGLFASNLAAASPAAASNGTNNEDDSDETSKRDAREGGEEQDEEKDDT
GEEEESSKAIGEAAALNVAAAAMASSGMSANSLAFNPFLLSTMAPGLFSPYMFLPPGLGG
LTLPPGLGGLTLPGFPPTALTDLQSAMAGAMGVASGAQSQEKEPSQVALDCPAAAIVDPE
TADDSDSAESLEKTAESSALEDETSALAGEADSPEDLEEGEDALEEEEK
NT seq
9150 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccccagagcccaaggcgaagggcacgggcagtccttccctgacggaggagccg
tatggggcccccagactggccgcgggcagggcaggcctccattccagcagcaacaggcat
ccccccaggccccctcccaccagcagcacggcccctctgggtcccaggccccctcccacc
agcagcacggcccctctgggccccaggccctcccaccagcagcacggcccctctgggccc
caggccccctcccaccagcagcacgacccctcagggccccaggaccacggccactgtatg
ggcccctacatgggccggtccgactatgccactatgcagggccaccctggccagacccag
acgccacccaggatcaaccacttccctccgggcatgggccaggagcccaaccactacatg
ggccacgtggggctccagcagaactccagcatgacgggccacccggcacagcaacagcag
cccccccagcagttcctccaccggcccggccagggccctgttcacacccaggaccacatg
gcctcccacacctctcaccagcagcaccagggcttggccgggaggccacaccagaacatg
gggttcaacatgcacggccaggcagcctctcctggtgctgtaaccagctcagggccgtac
cccccctacccccagtacggcaaccttaatcagggattagccggcagtgcagggatgagt
cccggcatgagcctcagcagcaccagcaacaacaacagtagtgccagcgggcctatgggg
ccagaccaagtccagtgttaccccaacgcaggggggggcccacagtgctacccggatctt
caggtacaccagcagcctgtccaccccaaccaaatcaccggccagcccatgcacccctcc
caggcccaggccaccccccataagcagccccgcctccccacaccacctcatggatcatac
agctctcccacctccatgtcccccatgaagggcatgggaaccaccgcggtcacacctccg
cctcaacaggtccgaccccctagtgcaggtcttgctcccgaggtaggggtgtaccccgga
gtgccactccaggctcctaactccattgccccccctcagagaaacaccactcccctgggc
gtgcagcaaccgcaacatcatccccagcacctctcccacccacagcagcacccccacatg
cccctgagccagcagctctaccagggtatgtcccccaaccaaagaggccctctcgaccag
gtgagacctccaggtcctatggcccacggtgagcatccaggaccacaggaccagcagctg
ctcactccccagcaacaggcacccaaatctgggctgcagcctcctcccatggccttccag
cagcaggtgcacccagccccgaccgctttgcccccatcgcaggctcagacacatctggac
ggcccccaccaccagagctccccgcccaaccagccaccttgggtgccggcaggacaccag
tcgcttccaacccctcagaaagtgcctcacattcagtattctacgtcatctgagatgaca
gcttctgacaggacacccgcttcgggggctaacctccagccagccaaccgtgacaagaag
cccatcgagcagaaaccaaaaaagaagaaagcgaaggtgatggtggagggggaaaagaag
cccaaaaagaagaaaggaggatgtatagaggaatgtggcgaggaggggaaacgaaaggtc
ggggacggtccctgggcggaggttaactgtctgacaggtgccctggaggaatcacttgtg
gtgaagacaaagaagaaaccgaaggagcctaaagagcccaagactccgaaaacacccaag
acccccaaagagcccaaggagaaggccaagagcactacccccaaggtcaagatgcccaag
aagcccagaagcactaagaaggtggagtcagcggagggcagtgtcagcagtgtgaaggag
actaagaggatgagggagccctcggtcagctctgatgtggagaagtcacccccaggcccc
tccgatgaggacaacgacgatgacggtgtccagaagcgtcgttctagtcgtcaggtgaag
aggaagcgctatacagaggaactggagttcaggatctcagacgatgatggagatgtttcc
cccgctcccaagtcgcccttcaacacctctgaacagcaggaggtggagacagaggggcct
gtggtggagaagattctgtccatacgcatggggaagaaagagatggaatcgggagagaaa
atggaagtggaagaattctatgtcaaattcaagagcttctcctacctgcactgtcgctgg
gcagatctggaggacctggagaaggacaaaaggatccaccagaaggtcaagcggttcagg
gccaaacaggccctccccaccttcgtgacagagatggatgacgagcctttcaacccagac
tacgttgaggtggaccgggtactggacgtgtcagagagcacagatgagaacggagagcct
gtaaagctgtacctggtgaagtggtgttccctgccctatgaggatataacttgggagctg
aaggccgacatcgaccaggccaagatcgatgagttcgaggccgtggcggcccgtcagccc
aagaccaaacgcgtggagcgacctcccaccgaaaactggcataaatccgagagttccagg
gattataaaaacgacaacgcactcagggaataccagctggagggagtgaactggctgctc
ttcaactggtacaatacacggaactgcatcctagcagatgaaatgggcctgggcaagacc
atccagtccatcacattcctctatgagatctacctgaaggggatccacgggcccttcctg
gtcatcgcccccctctccaccattccaaactgggagagggagttccgcacctggaccgaa
ctcaacgtgatcgtctaccacggcagccaggccagccgcaagaccatccaggcctacgaa
atgaactaccgcgacatgcagggtcgtgtgataaagggagcgtacaaattccatgcggtc
atcaccacatttgagatgattctgacagactgtcctgagctgcgcagcgtctcgtggcgc
tgtgtggtcatcgacgaggctcaccgcctcaagaacaggaactgcaaactgctggagggt
cttaagatgatggacatggagcacaaggtgctgctgaccgggacccccctgcagaacacg
gtggaggagctcttcagtctgctcaacttcctggagcctgaacgcttcccctctgagaac
accttcatgcaggagtttggagacctcaagactgaggagcaggtccagaagctgcaggcc
atcctgaagcccatgatgctgcgacgtctcaaggaggacgtggagaagaacctggccccc
aaggaggagaccatcatcgaggtggagctgaccaacatccagaagaagtactaccgggcc
atcctggagaagaacttctccttcctgtctaaaggaggaccgggaggaggaggtggtgca
tggggaggtggcggtgcacaggtccccaacctgctcaacaccatgatggagctgaggaag
tgctgcaaccacccctacctcatcaatggtgcagaggagaagatcctggacgacttccgt
gagaaccaccatgccgagatgccccaattccacctacaggccatgatccaggcagcgggc
aagctggtgctgatcgataagctgctgcccaagcttaaggccgggggacacagggtcctc
gtcttctcccagatggtgcgctgcctggacatcctggaggactacctcatccagaaacgg
tacccgtatgagcgtatcgatggccgtgtgaggggtaacctccggcaggctgcaattgac
cgcttctctcgtccgggctctgaccgctttgtattcctgttgtgtacccgggccggaggt
ctgggcatcaacctgaccgctgccgacacctgcatcatctttgactctgattggaacccc
cagaatgatttacaggcgcaagccagatgccacaggattggccagagcaaggcagtgaag
atctacaggctgatcaccaggaactcctatgagagggagatgtttgacaaggccagcctc
aagctgggcctcgacaaggctgtgctgcagtccatgagtggccgagaaaatgcagccaac
ggggttccacagctgtctaagaaggaggtggaggacctcctccgtaaaggagcctacgga
gctctgatggatgaggaggacgagggctcaaagttctgcgaagaggacattgaccagatc
ctcctgagacgaacccagaccatcaccattgagtccgagggcaaggggtccaccttcgcc
aaggcgagctttgtggctgctgggaacaggacggacatttccctggaggaccctgacttc
tggcagaagtgggccaagaaggcggagcttgacatggaagccatcaatggacggaacacc
cttgtgattgacactccgagggtgcggaagcagacacgccactacagctcaatgaaggag
gacgaattggcagagttctccgagctggaaagtgacggcgagaatgagaagcccttgacc
aaactcaggcgaccccaggaccgagctcacgggtacccccgcagcgagtgcttcagggtg
gagaagaacctgctggtttatgggtggggtcgctggggagacatcctgtcccgcgggcgt
ttcaaacggcccctgcaagaacaagatgtggagaccatctgccgcgccctgctggcctac
tgcctgctgcactaccgtggcgacgagaacatcaagcgcttcatctgggacctcatcacg
ccctctgaggacggacagagccgcacactcaccaaccactccggtctgtctactccagta
ccgcggggtcgtaaggggaagaaggggaaaccagccccacctgcccctccccagctcccc
agggcagagtggctggccagctgtaaccctgacctgctactgcaggaggacagctacaag
agacacctcaaacaccactgtaacaaagttctccttagggtccgtatgctctactatctg
cgacaggaagtcatcggtgaccacgccgacaggatcctagagggaacagactcaagtgaa
atggatatctggatccctcagcctttccacgccgaggtgcccgccgattggtgggacagc
gaggcagacaaatcgctgctcatcggtgtcttcaaacacggctatgagaagtataactcg
atgcgtgccgaccctgcgctgtgtttcttggagcgggtgggcatgcccgacgccaaggcc
atcgctgcagagcagaggggggcggacatgatggcagatggtctggagggagaggatgaa
gaccccgagtacaagcctctccgcatgacctttaaagatgagatggaggactttgcgaac
tcacccctggatgacaaagacgagactgtggacattgagagtggtgaatctaaaccaggt
gagaatgtagcaggcagcagaggggcgggtagtctgtactggccggcggcctcggccctc
accgctagactccgccgcctcatcacggcctaccagcgcacgcacaagagggagcagctc
cgccaggaagccatggcccggcccgacggacgccgccgccgccggccccgagaacatctc
ttctccatggtcacagacggaggggcctacgtgcaggaggacggagccttcatggcagag
ggaagtccttatatggccatgggcggggcttttatacctgaggtgccggtactcccggcg
gaaggaggggccgccttcaaagagaggcgtcagaggtggaccaggcgtgaggaatccgac
ttctaccgggttgtgtccacgtttggtgtgatctatgacatggaccgccagctctttgac
tggacccagttcagggccttcgcccggctggacaagaagagtgacgagagcctggagaaa
tactacttctccttcgtggccatgtgcaagcgggtgtgtcgcatgcaggtcaaggccaac
acggagctcccagaccctaccctgatcatcgaccccatcacggaggagcgcgcctcacgc
accctctaccgcattgagctgctgcgtcgcattcgtgagcaggtgctgcccaaccccctg
ctaggtgagcgcctgcgcctctgccagcctagctccgacctgcccgagtggtgggcctgc
cgccggcacgaccacgacctcctcctgggcgcctccaagcacggcgtgagccgcactgac
taccacatcctcaacgaccctgcgctgggcttcctggaggcccacaggaagttcaccaag
ggggcatcggctggggtgcctcagccgccccgcgatgcagctctctctactgcttcttcc
tcttctactgagcaggccacagctactgctggtgctgaaaaatccttacctgtccaagag
gaggaagaagggaaggagatgaaagaggaaggtgatgatattccatgtactaaacctgag
aaaccagacgaaggcaaggaagaagagatggaggcgaagaaggaagagaaggccgggtct
cccaagaaggtgaaggacgaggaggaagacggagaggagaaagtggaggtcaccggcgac
gctgacggagagacttccaaggaggccaaacccgagaaggagtacaaagctcccactgag
gagaccaaggaccaggacaaaaagctggacttccaggagaaaccagagtctcctaaagca
tcagaagagcagggaaccaagaaggatgagaaagaaggaagccctgccaagtctcctaaa
ccagtggctgagaaagggcccgatgaggagaagatggaggaagacgacaggtctgagaag
tcctctcaagctgaagcagccgccacctcagagcagaagaactttgacgaggagagcaac
gcctcactgagcaccacagccagagacgagacccgtgacgggttctgccccgaggaagag
ccgtctgccatcccggccctccaggagagagccacctcatccttctggcccaaggatcgt
gtcatgatcaatcgcatggacaacatctgcgatgcggtcatcaagggcaagtggcccgcc
aaccgacgccagttctttgactccccgggcctgttgcctggataccccggccccatgacg
tctgaaagccccatgccgaggcagagcctggccgaactgtcgatggcagcgggcgctcag
accaacttcagtggcagcgaggacctcaccctctctccccaggttaatgaggatgctctg
agcatatcattgccgaagcagcgtcgtcgcaggcggaggaaggtggagatggaggcggag
cgtgcggccaagcgcaggaacctgatggatatggtggcccagctcagagagtctcacgct
gcagagtcccagagccaggccatggatcttaccaagggtattctgcaccagcaccacaag
tcttcagcgccgtccccggcgagctactccagcagcatggtgtcacctgctgccctcaaa
gcacagatggagcttctgcaggcggccacaccctccagacacagggccaactgctcattg
gccgaggctgacctgcccaccaggaggaggcggggccgcaggaaaaatgtggaggggctg
gagctgctgttcatgagaggagccacggaggattcagagaggaccaaagcttcagtggag
gggttgcagatgcccccacgttcccaccgccacaacattcccagcacctccgcccgtgtc
ccctctgtcagcgctatggaggacagggaggctggtaccccctctaacaaagacctgagt
gactggctcagacagcaccccacatacaccatggacatgcctactgcgtacacaccaaag
agtgaggagactctcctctcctcccagttccccaaacccaagcaaaagagacaccgctgc
cggaaccccaacaagatcgacatcaacacgctcaccggagaagagagggttcccgtggtc
aaccggagaaatggaagaaagatgggtggagccatggcccctcccatgaaggatcttccc
agatggctcctggagaactcagattttgccgtcgctccagactggactgacattgtcaag
caatcgggcttcctccctgaggccatgttcgaccgtctcctgactgggcccttggtgcgt
gaggagggcgtccgtcgtcggggaagacgtcccaaatcggagatcgccaaggcaacagcg
gctgcctcggctgcatcctctgggggccttaaccccctgctgataaacggcctgtttgga
ggcatggacctcaccagcttgcagggcctacagagcctccagagtctgcagctgcagctc
atgggcttccccggcatggggggggctgactctaaacacgcctcggccatgctgcctctc
atgctgcctggcattctgcccaacatgtttggcctgggaggcctgttcgcaagcaacctg
gctgcagcctcccctgctgcagcctccaatggcaccaacaacgaggacgattcggacgag
acatcgaagagagacgccagggagggtggagaagagcaggatgaggagaaggacgacact
ggggaggaggaagagtcgagcaaggctattggggaggccgcggctctgaatgtggctgct
gccgctatggcctcctccggcatgtcggctaactccctggccttcaatcccttcctgctc
tccaccatggccccagggctcttttccccctacatgttcctgccccctggcctgggaggt
ctcaccctgccccctggcctgggaggtctcaccctgcctggcttcccccccactgccctg
accgacctgcagagtgccatggctggagccatgggggttgcctctggagctcagagccag
gagaaggagcccagccaggttgccctggactgccctgctgccgctatcgtagacccagag
actgctgatgacagtgactcagctgagagcctggagaagactgcagagtcgtctgcgcta
gaagatgagacctccgctttggcaggggaagccgactcaccggaagacctggaggaagga
gaggatgcccttgaggaggaagagaagtga
DBGET
integrated database retrieval system
