Oncorhynchus tshawytscha (Chinook salmon): 121841821
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Entry
121841821 CDS
T05605
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121841821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
121841821
03036 Chromosome and associated proteins [BR:
otw03036
]
121841821
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
121841821
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
121841821
RSF complex
121841821
WICH complex
121841821
B-WICH complex
121841821
NORC complex
121841821
BRF complex
121841821
NuRF complex (fruit fly)
121841821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
121841821
NCBI-ProteinID:
XP_042168051
LinkDB
All DBs
Position
LG34:complement(15316575..15327883)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSETGNGVELRKEQAVELEETGGVEEKDDVSEASKEESSEAGQDAQDEDPSSSTAPAYEE
KVASDRTNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVGDNR
HRRTEQEEDEELLSESSKTTNVCTRFDESPSFVKGGTMRDYQVRGLNWLISLYENGINGI
LADEMGLGKTLQTISLLGYMKHYRSIPGPHMVLVPKSTLYNWMNEFKRWVPSLKAVCLIG
DREQRNALIRDVLLPGEWDVCVTSYEMLIIEKAVFKKFNWRYLVIDEAHRIKNEKSKLSE
IVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQKLVE
RLHTVLRPFLLRRIKNEVEKSLLPKKEIKMYVGLSKMQREWYTKILMKDIDILNSAGKMD
KMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLAVNSGKMAVLDKLLPKMKAQGSRV
LIFSQMTRMLDILEDYCMWRNFGYCRLDGQTPHEERQISINAYNEEDSPKFIFMLSTRAG
GLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITENTVEERIVERAE
MKLQLDSIVIQQGRLVDPNANKLGKDEMLSIIRHGATHVFASKESDITDDDIDEILERGE
KKTMELKEKMNTMGESSLRNFTMESDNSVYTFEGEDYREKKKVVTNWIEPPKRERKANYA
VDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILFYRKTIGYKVPRN
PELPNSAQHQKEEQAKIDEAEGLSEEELEEKENLLSQGFTIWNKRDFNQFIKANEKWGRD
DIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDT
KIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFEKESVYDELRQCIRNSPQF
RFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKKGPRSQSSAQKRKGEGTP
DPRGGRRKKLKL
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagactggaaacggcgtggagctgcggaaagagcaagcagttgaacttgaagaa
accggaggagtggaggaaaaggatgatgtgtcagaggcaagcaaggaggagtcttctgaa
gccggacaggatgcccaagatgaggacccctcttcatctacagcgccagcctatgaggag
aaagtggcatcagaccggaccaacagatttgagtacctactgaagcagacagaggtgttt
gcccatttcatccaacctgcggcccagaaaacccccacctccccgctcaagatgaagcca
gggcgccctcgtgtcaagaaggacgagaaacagaatctcctctcggtcggagataaccgt
catcgtcgcacagagcaggaagaggatgaagagctgctgagcgaaagcagcaagaccacc
aacgtctgcacccgcttcgacgaatctccctcctttgtaaaagggggtacaatgagagac
taccaggtccgtggtctgaactggctcatctctctgtacgagaacggaatcaacgggatc
cttgctgatgaaatgggtttgggtaagaccctgcagacgatctctctgctggggtacatg
aagcactacaggagcatccccgggccccacatggtgctggtgcccaagtccaccctgtac
aactggatgaacgagttcaaacgttgggtcccctccctcaaagcagtctgcctcatcgga
gaccgagagcagaggaatgccctgatcagagatgtgctgctgccaggggagtgggatgtg
tgtgtcacctcttacgagatgctcatcatagagaaggccgtgttcaagaagtttaactgg
aggtacctagtcatcgacgaggcccacaggatcaagaacgaaaagtcaaagctgtctgag
atagtgcgtgaattcaagaccaccaaccgtctgctgctaaccggcaccccgctgcagaac
aacctccacgagctctgggccctgctcaacttcctgctgccagacgtcttcaactcctct
gaggactttgactcttggtttgacaccaacaattgtctgggggatcagaagttggtggaa
cgtcttcacactgtactgcgtcctttcctgctgcgtcgtatcaagaatgaggtggagaag
tctctgctgcctaagaaagagatcaagatgtacgtggggctgagtaagatgcagagagaa
tggtacaccaagatcctgatgaaggacatagacatcctgaactctgcagggaagatggac
aagatgcgcctgctcaacgtcttgatgcagctgaggaagtgctgcaaccacccgtacctg
tttgacggggccgagcccggcccgccttacaccaccgacctgcacctggccgtcaacagc
ggcaagatggccgtccttgacaagctgctgcccaagatgaaggctcagggctcccgtgtg
ctgatcttcagccagatgaccaggatgctggacatcttggaggactactgcatgtggcgc
aacttcggctactgtcgcctggacggacagacgccccacgaggagagacagatctccatc
aacgcgtacaatgaggaggacagccctaagttcatcttcatgttgagcaccagggccgga
gggctgggtattaacctggccacagctgacgtggtcatcctctacgactcagactggaac
cctcaggtcgacctacaggccatggaccgagctcacaggattggtcaaaagaagcaggtg
cgcgtgttccgtttcatcacggaaaacacagtagaggagaggatcgtggagcgggccgag
atgaagctccaactggactccattgtcatccagcaaggaaggctagtggatcccaacgcc
aacaagctggggaaggacgagatgctgtctatcatccggcacggcgccacgcacgtcttc
gcctccaaggagagcgacatcaccgacgatgacatcgacgagatcctggagcgaggcgag
aagaagaccatggagttgaaggagaagatgaacaccatgggcgagagctccctgaggaac
ttcaccatggagtccgacaacagtgtgtacaccttcgaaggagaggactacagggagaag
aagaaggtggtcaccaactggatcgagccacccaagagagagaggaaggccaactacgca
gtggatgcctacttcagagaggccctgcgtgtcagcgagcccaaagcacccaaggctcct
cgtccacctaagcagcccaatgtgcaggacttccagttcttccccccaaggctgtttgaa
ctgctggagaaagagatcttattctacaggaagactatcggctacaaggttcctcgtaac
ccagaactgcccaactctgctcagcaccagaaggaggagcaggccaagattgacgaggcc
gagggcctatcagaggaggagctggaggagaaggagaacctcctctcgcagggcttcacc
atctggaataagcgtgactttaaccagttcatcaaagccaatgagaagtgggggagagat
gacatcgagaacatcgccagagaggtggagggcaaaaccccagaggaagtcattgaatat
tccgctgtgttctgggagcgctgcaacgagctgcaggacattgagaagatcatggctcag
atcgagaggggagaggcccgcatccagaggaggatcagcatcaagaaagcactggacaca
aagattggtcgctacaaggcgccgttccaccagttgaggatctcgtacggcaccaacaag
gggaagaactacacggaggaggaggaccgcttcctcatttgcatgctgcacaagttgggc
ttcgaaaaggagtcggtctacgacgagctgcgccagtgcatccgcaactcgccccagttt
cgcttcgactggttcctcaagtccaggaccgccatggagctccagaggcgatgcaacacc
ctgatcaccctgattgaacgagagaacatggagctggaggagcgggagaaggcagagaag
aagaagaaaggaccacggagtcagtcttctgctcagaagcgtaagggagaagggacccca
gacccgcgaggaggccgcaggaaaaagctaaagctgtga
DBGET
integrated database retrieval system
