Oncorhynchus tshawytscha (Chinook salmon): 121844485
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Entry
121844485 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha-like
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121844485
03460 Fanconi anemia pathway
121844485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
121844485
03400 DNA repair and recombination proteins [BR:
otw03400
]
121844485
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
121844485
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Topoisomerases
121844485
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
121844485
FA (Fanconi anemia) pathway
121844485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
121844485
NCBI-ProteinID:
XP_042170566
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MLIHHLTRALFTSGRPLTLRLQVHRRFSVTGQKRTDSPGDMIRRTQIKRVLCVAEKNDAA
KGIAEIMSDGRARRREGLSVYNKLYEYEYNLFGRNVTVCMTSVSGHLLGLEFKAQFQKWH
SCNPVLLFDAEVEKYCPENFVQIKRTLEREVSQCQALVIWTDCDREGENIGFEVIDVCKA
VKPGVQVFRARFSEITPNSIRRACDTLTEPDGNVSDAVDVRQELDLRIGASFTRFQTLRL
QKTFPASLANQLISYGSCQFPTLGFVVERFKSIQAFIPETFYKIRVLHEVEEESVEFSWK
RNRLFNHTACLVIYQICLEDPIATVTSVTSKPKSKWRPLPLDTVEMEKLVSRKLRIGAKE
TMKIAEKLYTQGLISYPRTETNLFPKDLALGPLVEHQTHSPSWGAFARGVMEQPGGPNPR
QGTKTDQAHPPIHPIKYTNTLQGNEQRVYEFIVRHFLACVSLDAVGQETVVEVEMAHERF
SANGLMIIRRNYLDVYPYDRWSTKVIPVYEQGSQFQPSAIEMLDGQTSPPQLLTEADLIS
LMEKHGIGTDATHADHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPHLR
AELEADLKLVSEGRKDKQSVLRHHIHKYKTVFVESVQKAKRLDEALSIYLGAAQEFSESE
QQDMEMPLPVRKCPQCGRDMVLRRRKEGNGKYLSCVGYPECKCSVWFPDTVLEVNRDESV
CPTCQPRPVHMLKLKFRRGSLPPMMPLEFVGCIGGCDETLREVLNLKYLRMGGGGGGRTP
NPLLILAPHPRPDPQAPRPDPRGGDITVCNCGSEAVLLTVRKDGPNQGRQFYKCSSGGCN
FFLWTDQPDTNVYPPGPQGRATQQATPAPGTSGEVVCNCSEPAVQRTVQKEGPNKGKVFH
TCGKPRDQQCGFFLWADENIPPPGSGSGGGDWGKRGRETGGGGAPPTTKPPATRKPRTCG
ICHMPGHTRVTCPQR
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgctgatacatcatctgactagggctctgttcacatccggacgaccgttaacgttacgg
ctccaggtccacaggcggtttagcgtcaccggacagaagaggacagactccccgggagac
atgatccggaggactcagatcaaacgggttctctgtgtggcggagaagaatgacgcggcc
aaaggcatcgcggagatcatgtctgacggcagagcgaggaggagggaggggctgtccgtc
tataataaactctatgagtatgaatacaacctgtttggaaggaatgtgacggtgtgtatg
acgtcagtttcaggtcatctgttgggtctggagttcaaggctcagttccagaaatggcac
agctgtaatcctgtcctgttgtttgatgcggaggtggagaagtattgtcctgagaacttt
gttcagatcaagcggaccctagagagagaggtgagtcagtgccaggcgcttgtcatctgg
acagattgtgacagagagggagagaacatcggctttgaggtgatagacgtctgcaaagca
gtcaagcccggtgtgcaggtgttccgtgctcggttctctgagatcactcccaactctatc
aggagagcatgtgacacgttaacggaaccagacggcaacgtcagtgatgctgtggacgtc
cgtcaggagctggacctcaggataggtgcatcgtttaccaggttccagacactccgcctc
cagaagaccttccctgcctcgttggccaatcagctgatctcgtatggcagttgtcagttc
cctacgctgggattcgttgtggaacgtttcaaatccatccaggcatttataccggagaca
ttctacaagatcagagtcctccatgaggtagaggaggaatcagtagagttcagctggaag
aggaacagactgttcaaccacacagcctgtctagtgatctaccagatctgtctggaggat
cccatagcaaccgtcacctcggtaaccagtaaacccaaaagcaagtggaggccgctgccc
ctggacacagtggaaatggagaagctggtttccaggaagttgagaatcggcgccaaagag
accatgaaaatcgctgagaaactatacacacaggggttaatcagttatccgcgtacagag
accaacctgtttcctaaggacctggccctgggccccttggtggagcatcagacacacagc
ccctcctggggggccttcgctaggggggtgatggagcagccagggggacccaacccacgg
cagggcaccaagacagatcaggctcacccccctatacaccccattaagtacaccaacaca
ctacagggcaacgagcagcgtgtgtatgagttcattgtgcgtcacttcctggcgtgcgta
tcccttgatgctgtggggcaggaaacggtggtcgaggtggaaatggctcacgagaggttc
tccgcaaacggcctcatgatcatcaggaggaactacctggacgtgtacccctacgaccgc
tggagcactaaggtgatcccagtgtatgagcagggtagccagttccagccgtcagcgata
gagatgctggatggccagacctctcctcctcaactcctcacggaggcagacctcatatca
ctgatggagaaacacggcatcggtacggatgccacccacgcagatcacattgagaccata
aagagccgtatgtacgtgggactaacagctgatcagaggtttctaccaggagagcttggg
atgggactggtggagggttataactccatggggtatgagatgtctaagccacacctgcgg
gcggagctggaggcggacctgaagctggtatcggaggggaggaaggacaaacagagcgtg
ttgagacaccacattcacaaatacaagacggtcttcgtagagtctgttcagaaagccaag
aggttggacgaggctctgtctatctatctgggcgctgcccaggagttcagcgaatcagag
cagcaggatatggaaatgcccctcccagtcaggaaatgtcctcagtgtgggcgggacatg
gtgctgcggaggaggaaggaggggaatgggaagtacctgtcctgcgttggttacccagaa
tgcaagtgttccgtgtggtttccggacacggtgttagaggtcaacagagacgagtctgtc
tgtcccacctgtcagccccgccctgttcacatgttaaagttgaagttccgacgaggcagc
ctccctcccatgatgccgctggagtttgtgggctgcatcggagggtgtgacgagacactg
agggaggtgctcaacctcaaatacctcagaatgggtggagggggtggcgggaggaccccc
aaccccctcctcatcctggccccccaccctcgccctgacccccaggccccacgccctgac
cccagaggtggtgacatcacagtgtgtaactgtgggtcggaggcggtcctcctcaccgtg
aggaaagacggtcctaaccagggcagacagttctataagtgttcctctggaggctgtaac
ttcttcctgtggaccgaccagcccgacactaacgtttaccctccaggcccccaggggcgc
gccacccagcaggccacaccagcccccgggacctccggggaggtggtttgtaactgcagt
gagccagcggttcagaggacagtgcagaaggaaggacctaataaaggaaaagtgttccat
acctgtgggaagcccagagatcaacagtgtggattcttcctctgggctgacgagaacatc
ccaccaccaggttcaggttctggagggggagactgggggaagagggggagggagactggg
ggaggaggagccccccccaccaccaaaccccccgctaccaggaagccccgtacctgtggc
atctgtcacatgcctggacacacacgtgtcacctgccctcagcgctga
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