Oncorhynchus tshawytscha (Chinook salmon): 121844694
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Entry
121844694 CDS
T05605
Name
(RefSeq) general transcription factor IIF subunit 1-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121844694
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
121844694
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
121844694
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
121844694
NCBI-ProteinID:
XP_042171012
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKEGDVKGKGKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEVGEEKAKSN
KEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSEDS
DIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSTSTSNTLRAAASKLEQ
GKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTEEA
VRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLTE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgggtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggctcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggcc
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagagggccggacgatgacgacgaggagggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgacgagagtgacagcagcggaggagaagatggagacagcaag
cccaagaagaaagagggggatgtgaaggggaaggggaagaagaagaagaagaagaggggc
agtgacagcgaggctaatgaggacagtgacgatggagactttgagggcctggaagtcgac
tacatgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggccaagtccaat
aaagaggccgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagcgaggag
gagaaacagaacgaggaagaggggaaagaggaggaggaggaagaggaagggaagaagacc
ccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggaggacagc
gacatcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcctcctaag
cgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaacaccg
tccatagactccacctccacctccaacacgctccgagccgccgctagcaaactggagcaa
ggtaagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctgaagatg
gagtccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagcacgcca
cagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggaggaggcg
gtgcgtcgctacctgatccggaagcccatgaccaccaaggacctgctgaagaagttccag
accaagaggactggcctgagcagcgagcagacggtcaacgtcctggcccagatcctcaaa
cgcctcaaccccgagaggaagaacgtcaacgacaagatgcacttctacctcacagagtaa
DBGET
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