Oncorhynchus tshawytscha (Chinook salmon): 121845277
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Entry
121845277 CDS
T05605
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otw03016
]
121845277 (rtcb)
Enzymes [BR:
otw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121845277 (rtcb)
Transfer RNA biogenesis [BR:
otw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121845277 (rtcb)
Prokaryotic type
tRNA splicing ligases
121845277 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121845277
NCBI-ProteinID:
XP_042172218
LinkDB
All DBs
Position
Unknown
AA seq
532 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMQVEGVFYVNESLEKLMFEELRNACKGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDCHSGYGFAIGNMAAFDMSDPNAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQALFDHIPVGVGSKGVIPMTAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
LSLFQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDA
LVAMEKAMKRDKIQVNDRQLACARIFSEEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFA
KVFTTTPDDLDMHVIYDVSHNIAKVEEHMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQ
LTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNIDFQDVLDKLA
DKGIAIRVASPKLVMEEAPESYKNVCDVVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgatcgtacaatgacgagttacaatatttggacaagattgacaagaactgctgg
cgaatcaagaaaggtttcgtcccaaatatgcaggtggaaggagtgttttacgtcaacgag
tccttggagaagctgatgtttgaggagctgcgtaacgcgtgtaaaggaggaggttttggt
gggtttctccctgccatgaaacagattggaaacgttgcagctctgccgggtatagtccat
aggtccatcggcctgccagactgccactcggggtatgggttcgccatcggaaacatggct
gccttcgacatgagcgaccccaacgctgtcgtatccccaggtggtgtggggtttgatatt
aactgtggagtgcgtctactaaggaccaacctagacgagggagacgtccagcctgtcaag
gagcagctggctcaggccctgtttgaccacatccctgtaggagtcggctccaagggagtc
atccctatgaccgccaaggatctagaggaggctctagagatgggagtggactggtccctg
agagaaggctatgcctgggcagaggataaggagcactgtgaggagtatggcaggatgctg
caggccgaccccaacaaggtctcctccaaggccaagaagagaggcctgcctcagctgggt
actctgggggcagggaaccactacgctgagatccaggtggtggatgagatctataatgat
ctgtccttattccagctaggtactctgggggcagggaaccactacgctgagatccaggtg
gtggatgagatctataatgactatgctgctaagaagatgggcatcgaccacaagggccag
gtgtgtgtgatgatccacagtggcagcagggggctgggccaccaggtggcgacagatgcc
ctggttgccatggagaaggcgatgaagcgagacaagatccaggtgaacgatcgtcagctg
gcgtgcgcccgtatcttttcagaggagggacaagactacctgaaaggaatggccgccgcc
ggcaactatgcctgggtcaaccgttcctctatgaccttcctcacacgacaggcgtttgcc
aaggtgttcaccaccactcctgatgacctggatatgcatgtgatctatgacgtgtctcat
aacatcgccaaggtggaggaacacatggtggatgggaaacagaagactctactgctgcat
cgcaagggatccacccgggccttccctccacaccaccccctcatccctgtagactaccag
ctgacaggccagccggtgttgatcgggggcacgatgggcacctgcagttacgtcctgacg
ggcacggaacagggcatgacggagacattcggcaccacctgccacggcgcgggtcgggct
ctgtctcgggccaaatcccgcaggaacatcgacttccaggacgtgttggacaagctggca
gacaagggtatcgccatcagggtggcttcgcccaaactagtcatggaagaggctccggag
tcgtacaaaaacgtgtgtgatgtcgtcaacacgtgtcacgatgctggaatcagcaagaaa
gccatcaaactacgacccatcgctgtgatcaagggataa
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