Oncorhynchus tshawytscha (Chinook salmon): 121846977
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Entry
121846977 CDS
T05605
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
121846977
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
121846977
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
7TM_GPCR_Sri
Motif
Other DBs
NCBI-GeneID:
121846977
NCBI-ProteinID:
XP_042182147
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Position
LG08:63525370..63528315
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AA seq
809 aa
AA seq
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MGNWRSTDRRGRWQVLFFFLCLSALDSVTGQARYSIPEEQSEGSIVGNIGRDLGLEVKRL
VSGKARIITKGGARQYVDLNRDKGLLVVKERIDREELCGPTTPCSFSFELIIENPIQLYR
VTVEVRDINDNTPSFPKDEIHFKISESAVSGARFSLESAVDPDVGVNSIQNYSLRPKDNF
KLEVHSQADGGKYIEMVLQTPLDREEQETLSLMLIATDGGEPQRTGTVRIHITVLDANDN
APVCGQPVYKTDVKESSPKGTLITTVSADDADQGVNGEVTFSIAHVAKEAKELFELDVDT
GEIKVVGRLDFEKSRNYQLNVQASDHGGFTDTCKVVIQIIDENDNVPTIQLMSHSNSIPE
DSPPGTTVAVINVEDVDSDGNGVVLCYINADIPFKIESSLTDYYTIVTDSTLDRETVSEY
NVTITVSDEGTPPLSSNKSITVKVSDVNDNPPKFDQPVYSKSIQENNSPGFSIFSVRASD
ADWGQNARVSYFLDDKQVNGVTASSVVSVNSENGAIHAVRSFDYEQIKSFQFNVTARDGG
SPPLSSVVAVRILVQDQNDNAPQVLYPVQTSSSLVAEMVPRSADVGYLVTKVVAVDVDSG
QNAWLSYKLQKATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLTVVVEDNGQPSRSATVN
VNVAVADSFPEVLSEFTDFTHDKEYNDNLTFYLVLALAVVSFLFITCLVVIISVKIYRWR
QSRVLYHSNLPVIPYYPPRYADTLGTGTLQHVYNYEVCRTTDSRKSDCKFVRPCSQNVLI
MDPSSTGTMQRMQSEQNILDEPDSPLEGA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgggtaactggagatcgactgaccgcagaggccggtggcaagtactgtttttctttctt
tgtctgagcgccctagattctgtaactggacaggcacgatattccataccagaggagcag
tcagaggggtcgatcgttggaaacattggtagagatttgggtttggaggtgaagagacta
gtgtccggtaaagctcgcattataacaaaaggaggagcgcgacagtatgtagatctgaac
cgagacaaagggcttctcgttgttaaagagagaatcgaccgagaggagctctgcggaccg
actacgccttgtagcttcagctttgagcttatcatagaaaaccccattcagttatatcga
gttacagtagaggttcgtgacattaacgataacaccccgtcctttccgaaggatgaaata
catttcaaaatcagtgaatctgccgtgtctggggcacgattttctctggagagcgccgtt
gaccctgacgttggtgttaacagtatacagaattattctctaagaccgaaagataatttc
aaattagaggtacacagccaagccgatggtggtaaatacattgagatggttttgcaaacc
ccccttgacagagaggaacaggagactctgtctctgatgcttattgctactgacggaggc
gagcctcagaggactggaactgtccgcatccatattaccgtgctggatgccaatgataat
gcgccagtatgtggtcaacccgtttataaaacagacgttaaggagagctccccaaaaggg
actttgataaccaccgttagcgcagacgatgcagaccaaggggtgaatggagaggtcact
ttctccatcgctcatgttgctaaagaggcgaaggagctgtttgagctcgacgtggatact
ggagagattaaggtggtaggaagactggattttgaaaaatcaagaaattatcagttaaat
gttcaggcgagcgaccacggagggtttactgatacgtgtaaagttgtcattcaaattatt
gatgagaacgataatgtccccacaatacaactcatgtcacattctaactcgattcccgag
gactctccccctggtaccactgtggctgttattaatgttgaggacgtagactcagacggc
aacggtgttgttctttgctatattaacgcagatattccgttcaaaatagagtcatcgtta
accgattattatacaatagtcactgatagcacattggatagagaaaccgtgtctgagtac
aacgtcaccattacagtttcagatgaagggactccgcctctctccagcaataagagcata
actgttaaagtatcagatgtgaatgataacccacccaagtttgatcaacctgtatatagt
aagtctattcaggaaaacaattcgccagggttttctatattctcagtgagagcgagtgat
gctgactggggtcaaaatgcccgcgtctcctactttctcgatgataaacaagttaacggg
gtgactgcttcctctgttgtctcagtaaattcagaaaatggcgccatccatgctgttagg
tcattcgattatgaacaaatcaagtcgtttcaattcaacgtcactgcccgtgatggaggg
tctccacctctcagttcagtggtcgctgttagaatattagtccaggaccagaatgacaac
gcgcctcaggttctgtatccagtccagactagcagctctctggtggctgaaatggtgcct
cgttcagcagatgtgggatatcttgtcactaaagtggtggctgttgatgtggactctgga
cagaatgcctggctctcgtataaactgcagaaagcgacagacagggcgctgtttgaagtg
ggcttacagaatggagaaataagaactatacgccaagtcactgataaagatgctgtgaaa
caaaggctcactgttgtagtggaggacaacgggcagccctctcgttcagctacagtcaat
gttaacgtggcggtggcggacagcttccctgaagtgctctcggagttcactgactttacg
cacgacaaggagtacaatgacaacctgactttttacttagttttggctttggctgtagtc
tcatttctgttcatcacatgtttagtggttattatatcagtgaaaatatacagatggaga
cagtctcgcgttctctatcactccaatctcccggttattccgtattatccaccgcgttac
gcagacactttggggacaggaactctacagcacgtgtacaattacgaggtgtgcaggacg
actgactccagaaagagtgactgtaagttcgtcagaccctgtagtcagaacgtactgata
atggaccccagttctacagggacgatgcagcggatgcagagtgaacagaacatcctggat
gaaccagactctccactagagggagcatag
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