Oligella ureolytica: I6G29_04320
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Entry
I6G29_04320 CDS
T07321
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
oue
Oligella ureolytica
Pathway
oue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G29_04320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oue03019
]
I6G29_04320
Enzymes [BR:
oue01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I6G29_04320
Messenger RNA biogenesis [BR:
oue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I6G29_04320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QPT40801
UniProt:
A0A378XCY9
LinkDB
All DBs
Position
complement(841787..843226)
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AA seq
479 aa
AA seq
DB search
MQSHLSNNNNNSTISDAEQSTVSPELTFNEFGLHPDLLKAIAQSGYTTPTPIQAQSIPAV
LAGRDVMGAAQTGTGKTAAFTLPVLHRIMPFASHSTSPARHPVRALILTPTRELADQVAE
NVERYCSTSSLRSTAVYGGIDIRPQKEMLRQGCELLIATPGRLLDHLEQKNVNLSQVGVL
VLDEADRMLDMGFMPDLERIVNYLPKQRQNLLFSATFSPEIRKLARTILVNPVEITVASN
NQTADTVTQLVYQVGERDKKAALLYLLMTQYTKQVIVFANTKLEVNRLSRFLTQEGVSAE
AIHGDRSQYERTRTLEDFKAGKVQVLVATDVAARGLDVAGLPCVINYDLPFNPEDYVHRI
GRTGRAGAKGKAIAFYNKEEDEQLLANVQQLINIDFKVERLDIPELFKNRAVEQPRRSYY
QQSKRETIDAFFYKPYEPDASDSVAESVPKTPQRVHERQEEPMLAVLLGGGRKTKTSDK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtcatttaagcaataacaataataattcaaccatttccgatgccgagcaatct
acggtcagcccggaattaacttttaatgaattcggcttacaccctgatctattaaaggcc
attgctcagagtggctacacgacaccaacgcctattcaggcacaatctattcctgctgta
ttagcgggccgtgatgtgatgggggcggcccaaaccggtacgggcaagacagcagctttt
accctgcctgtgttacaccgtatcatgccgtttgccagtcacagtacgtcgccggcccga
catccggtgagggcgctaattctcacgccgactcgcgagttggcagatcaggtggcagaa
aatgtcgagcgttattgcagtacctcatcgttacgctcaactgctgtttatggcgggatt
gatatccgccctcaaaaagagatgctccgtcagggttgcgagttattgattgccacaccc
ggtcgcttattagatcacttagagcaaaaaaacgtcaatctcagtcaggtaggcgtgctg
gtgcttgatgaagcagatcgcatgcttgatatgggctttatgccggatttagagcgtatc
gtaaattatttgccaaagcagcgtcaaaacttgctcttctcggcaactttcagtccggaa
attcgtaaattagcgcgtaccattttggttaatccggtagaaattacggtggccagtaat
aaccaaacggcggatacggtcacccagttggtgtatcaggtaggcgaaagagataaaaaa
gccgccttactttatcttctaatgacgcagtacaccaagcaggtcattgtgtttgctaat
acgaaattagaagtcaatcgcttaagtcgctttctaacacaagagggggtgtcagcggaa
gcaattcacggcgatcgttctcagtatgagcgtacgcgtacgcttgaggactttaaagcg
ggtaaggtgcaggtgctggtcgccaccgatgtggcagcgcgcggcctggatgtcgccggc
ttaccttgtgtcattaactatgacttgccatttaaccccgaggattatgtgcaccgtatt
gggcggaccggtcgtgcaggggccaagggtaaggccattgccttttataacaaagaagag
gatgagcagctattagctaatgtccagcagctcattaacatcgacttcaaagtagagcgc
ctagacattcctgagctctttaaaaatagagcagtagagcagcctcgacgctcatattat
cagcaaagtaagcgtgagacgatcgatgcttttttctataaaccttatgaacctgatgcg
agtgactcggttgctgagtcagttcctaaaactccgcagagagttcatgagagacaggaa
gaacccatgttagccgtgttgctcggcggtggtcgtaaaaccaaaacgtcagataaatag
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