Oligella ureolytica: I6G29_10800
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Entry
I6G29_10800 CDS
T07321
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oue
Oligella ureolytica
Pathway
oue03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oue00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I6G29_10800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oue03019
]
I6G29_10800
03009 Ribosome biogenesis [BR:
oue03009
]
I6G29_10800
Enzymes [BR:
oue01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I6G29_10800
Messenger RNA biogenesis [BR:
oue03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I6G29_10800
Ribosome biogenesis [BR:
oue03009
]
Prokaryotic type
rRNA processing factors
I6G29_10800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QPT39615
LinkDB
All DBs
Position
complement(2208879..2212100)
Genome browser
AA seq
1073 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFINY
GHERHGFLPFKEVARSYFKEGVDLRTARIQDALQEGQELIVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGISRRIEGEDRQELKEAMEQLDLPQGMSMIARTAGIGRSTEELD
WDLKYLLQLWTAIDNAAQQHPAPVLIYQESSLVIRAIRDYFSPAISEILIDTDEITAQAT
AFMQDVMPDNVNLVKRYRDAVPLFSRFQIEHQIETAYARNVSLPSGGSIVVDHTEALVAI
DVNSARSTRGGDIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMDDSKNQRQVEQK
LREALHFDRARVQMGKISRFGLMELSRQRLRPSLNEGSHITCPRCNGTGVIRDVESSALN
ILRLIQEEAMKENTAALHAQVPVDVATFLLNEKRQDILKIENRLNVRIVLIPNKALETPH
HHIERLRHDDSRLDDPKSSVELMPVPDSVIQWREQKAKFEEQEKKQVAIVKGISHGEPVP
PKPVTTAKAAVNSAGTAAAEVAERVIPKGFLHRIKSFFVRPNGEYDKKVEEKPTQHRRTP
TANKSAARTADSSQRQSRQRNQRRNAKRTSQPQDEEASTQQQNQRRQQRAKKLDQSNEQK
ADQQGQTANNRRNANTRNQQNQEGNKQQSRRSRRQPARQDDRNQAQQQDQKQDAQSQAQS
PQNQSQQDRAQQQATQHDKGQQRRQQRESREQRQQQQRDSKQQRDDLEVQQPQATTQAVE
TPQVQEQTEANNNARSATPKPAVESKTAEVSQRAKNHAVAEAQSDSQEESTHSDSRRRQN
RNSNRNRRPQKDNAASATTTLPFVPNEVMLKTPNHDYEEVSEQIAKGEIDLDTITQHDQS
APVTEVEAPLAVASEPVVESTATPMPESAAPVKSIEVKPTSTTESVETTEAVPSQVIESN
PLPAEQSTVETTAKVEAPAPTRDVVETKADTEEAAPVAMAATEEVASDKRETTAKQPAEN
LEKVIADAGLHMIETKATANTDASATAPVKLGRPRKAAKVLETSELIQVETVD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcaacgcaccaagaagaactacgcgttgcgattgtcgat
gggcaaaagctgatcgacattgatattgaaaccgcaggccgcgagcagcgcaaaggcaat
atctacaagggtgtcatcacccgcatcgagcccagcctagaggcttgttttattaactat
ggtcacgagcgccatggttttttaccgtttaaggaagtggctcgcagctatttcaaagag
ggcgtcgatcttcgcactgcccgtattcaagatgcacttcaagaaggccaagagctgata
gttcaggtcgaaaaagaagagcgtggcaacaagggggccgccctaactacctttgtttct
ttagccggtcgctatttagtcttaatgcccaacaacccacgcggtggcggcatctcacgc
cgcatcgagggcgaggaccgtcaagagctcaaagaagccatggagcaattggacctgcca
cagggcatgagcatgattgctcgcaccgccggcatcggacgctctactgaggaattggat
tgggacctcaagtacctactccaactctggacggcgattgataatgccgctcaacaacac
cctgctccggtcctcatttatcaggagtccagcttagttattcgtgcgattcgtgattac
ttctcacctgccatttctgaaatcctgattgatacggacgaaatcactgctcaggcgact
gcctttatgcaagacgtgatgcccgacaatgtgaatctggttaagcgttaccgcgatgcc
gttcccctattttcgcgcttccaaattgagcaccaaatcgaaaccgcttatgcacgtaat
gtgtcattaccttccggcggctcaattgttgtagaccacaccgaagcattggtcgccatt
gacgtcaactcagcacgctcaacgcgtggcggtgatattgaagaaactgcactacgtacc
aacttggaagcagcagaagaggtagcacgtcaattacgtctacgtgacttgggcggtctg
attgttatcgactttatcgatatggacgacagcaaaaaccagcgacaagtcgaacaaaaa
ctacgcgaagccttacattttgaccgtgctcgcgtacaaatgggcaagatctcccgcttt
ggtcttatggagttatcgcgtcagcgcttgcgtccgtcactcaacgagggctcacacatc
acttgcccacgttgtaatggtaccggtgtgattcgtgatgtcgaatcaagtgcgctaaat
attctccgtctgatccaagaagaggcgatgaaagaaaataccgctgccctacacgcgcaa
gttccggtagatgtcgcgaccttcttattaaacgaaaagcgtcaagacattctaaaaatt
gaaaatcgtctcaatgtccgcatcgtgctgattcctaataaggccttagaaactcctcat
catcatattgagcgcctacgccacgatgatagtcgtttagatgatcctaaatccagcgtt
gaattgatgccggttcctgattccgttatccaatggcgtgagcaaaaagccaaatttgaa
gagcaagagaaaaagcaagtagcgattgttaaaggcatctctcatggcgagcctgttcca
ccaaagccggtaaccaccgctaaggctgcagttaattcagccggcacggctgctgcagaa
gtagctgagcgcgtcatacctaaaggctttttacatcgcattaagtctttctttgtacgc
ccaaacggcgagtacgacaaaaaggttgaagaaaaaccgactcaacacagaagaactcct
actgccaataagtcagcagcgcgcactgccgactcgtcacaacgccaatcacgtcaacgc
aaccaacgacgtaatgcgaagcgcacgtctcagccgcaagacgaggaggcaagcactcaa
cagcaaaatcagcgccgtcaacaacgtgctaaaaagctagatcaaagcaatgagcaaaag
gcagaccaacagggtcagacggctaataacagacgcaatgccaatacgcgcaatcagcaa
aaccaagaaggcaataagcaacagagcagacgctctcgtcgtcaacctgcccgacaggac
gatcgcaatcaggcacaacagcaggaccagaagcaagacgcccaaagccaagctcagtcg
ccacaaaatcaaagccaacaagatcgtgctcaacagcaggcaacacaacacgacaaaggt
cagcaacgccgtcagcagcgcgagtctcgtgagcaacgccagcagcaacagcgtgatagc
aaacagcagcgtgacgacttagaagtacaacagccgcaagcgacaactcaagcagttgag
acgcctcaggttcaagagcagactgaagcaaataacaatgcgcgctctgctactcctaag
cctgccgttgaaagcaagacggctgaagtcagccaacgcgctaaaaaccatgccgtagca
gaagctcagagtgattcacaagaggaatcaactcactcggactctcgtcgtcgtcaaaat
cgcaatagcaatcgtaaccgccgtccgcaaaaagacaatgcagcaagcgctacgacaacc
ttgccttttgttcccaacgaagtcatgctcaagacacctaaccatgactacgaggaagta
tctgagcaaatcgctaaaggtgaaatcgatctcgacaccatcactcagcacgaccagtca
gctcctgtgactgaggttgaagcgccattagctgttgcgagtgagccggttgtcgagtct
acggctacaccaatgcccgaaagtgccgcgcctgttaaatcaatcgaggtaaagcctaca
tcgaccaccgaatctgtagagactaccgaggctgtgccaagccaagtgatcgaatccaat
ccactacctgctgagcaaagcacagtcgaaacaactgccaaggtcgaggcacctgcgcca
actcgagacgtcgttgaaacaaaagccgatactgaagaagctgcgcccgtggctatggct
gcgacagaagaagtagcaagcgacaagcgcgagacaacagcaaagcaacctgctgaaaat
cttgaaaaagtgattgccgatgccggtttacacatgattgaaaccaaagcaactgcaaac
actgatgcttctgcaactgcgccagttaaactggggcgccctcgcaaagcagccaaagta
cttgagacaagtgagttaattcaggttgaaaccgtcgattaa
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