Oligella urethralis: CEQ07_04070
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Entry
CEQ07_04070 CDS
T05343
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
our
Oligella urethralis
Brite
KEGG Orthology (KO) [BR:
our00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
our03019
]
CEQ07_04070 (hrpA)
Enzymes [BR:
our01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CEQ07_04070 (hrpA)
Messenger RNA biogenesis [BR:
our03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CEQ07_04070 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
nSTAND3
NACHT
T2SSE
ResIII
AAA_22
SRP54
AAA_30
AAA_25
SLFN-g3_helicase
DUF3247
AAA_23
Zeta_toxin
Mac
TsaE
Motif
Other DBs
NCBI-ProteinID:
AVL70674
LinkDB
All DBs
Position
865695..869516
Genome browser
AA seq
1273 aa
AA seq
DB search
MQKSQDRDSSDLSSNVALSQAKQLPPFIDFPEDLPVSECRADIQNALAQHQVIIVAGETG
SGKTTQLPKICLAMGRGQHKMIAHTQPRRIAAVSVAKRIAQELKTEVGQLVAYQVRFNER
SGPRSQIKLMTDGILLAETQRDPLLKRYDTIIIDEAHERSLNIDFLLGFLKNLLPKRPDL
KVIITSATIDAERFADHFKDAEGRPAQLIEVSGRMYPVEVRYQREDSYGAVSDDGDEDNE
QPDLSEMISDAVSECIRSGPGDILVFLPGEREIREAAEVLRQVNQQGLEVLPLFARMSQA
DQERIFKPSTNLRRVILATNVAETSLTVPGIRFVVDSGLARVKRYSWRNKVEQLQIEPIS
KAAANQRAGRCGRLGPGICIRLYSEEDFKRRPDYTDPEVLRSSLASVILRMKALRLHDIE
AFPFVDKPSGRAIADGYHLLQELGALNEHNRLTSTGRMLSRLPLDPKIARMILAAKEHHC
LTEMCIIAAALSIQDPRERPFEAQEASTQAHAKFRDKESEFISYLKLWSWYQEQYESRES
NRKLQRQLRKEFLSPLRLREWQDIHQQIRQLVEEQQWRFNQVDATYEELHRALLSGLLGN
IGLRSESVREYEGARGIRFVVHPSSYLQRRAAKWIMAAELVETTRLFARTVARVEPQWIE
QAGRHLLKKLYSEPHFDPRRGQVMVYERATLYGLQLYQGRKISYARLDPAHARELFIREA
LVAGAIRQNLPFLTHNLRLIEEIEHLEHKSRRQDILVDDELIYRFYDQYIPQDMHQVATL
EHWYKNLSSAEQAQLKLNKDELMRHEAAGISTEQFPKYLELDGLSLKLTYHFEPGSPKDG
VTMEVPVYALKQINPIHTQWLVPGMLKEKVALLLRSLPQRLRRHCVPIPDYAEQFVEAVS
AAPALKEKPLLSVLIDDIWQQTRVRVQSTDFKEETIPPHLSMIYKVVDEHGRMLSSSRNL
ALLKAEHAPAAEQSFKELLGEDRGTQATLEDHQHISSWDFGELPELLELKRGRQTVVGYP
ALVDQGNDCRIDVFDELHEATAAHRKGLIRLLKIALKEQIRYLSKNLKALPQLGMLYLSL
GTQEELQEEIIDCALIQSCLATPWPSDEASFNERVRDAKGRFGLLLQEVIRLLQQIMNEW
ATALKKLNLIKAHKKAYEDISQQLNTLIYKGFVSRVDYNILQHYPRYLRAVQLRIDKLKN
DPSRDQHLMHDVQLLQSKYQRRLSQLKGVPDPQMDEFAYLLQELRVALFAQELRTPMPVS
VKRLEKAWHSMSH
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatcacaagatcgagacagctcagatctttcatctaacgtagccctatcgcag
gctaaacaactgccaccgtttatcgactttcctgaagatttaccggtgagcgagtgcaga
gcggacattcaaaacgcactagcgcaacatcaagtgattattgtggcgggtgaaaccggt
tcgggtaaaacgacgcaattgccgaaaatttgtttagccatggggcgcggtcaacacaaa
atgattgctcatactcaaccacgtcgcattgctgctgtgtctgtcgccaagcgtattgcg
caagaactaaagactgaggttgggcaattagtggcttatcaggtgcgctttaatgagcgt
agcggacctcgttcgcagattaagctgatgacggatggtattttattggccgaaacccaa
cgtgatccgcttttaaaacgttatgacaccattattatcgatgaggcgcatgaacgcagt
ttaaatattgattttctgttgggctttttaaaaaatctactccctaagcgacctgatttg
aaagtgatcattacctcggccaccattgatgctgagcgctttgccgatcattttaaagat
gccgagggtcgtcccgcgcaattgatcgaggtgagtgggcgcatgtatccagtggaagtt
cgttatcaacgtgaggatagttatggcgcggtgagcgacgatggggatgaggataatgag
cagcctgacttgagtgagatgattagcgatgcggtcagtgaatgtatacgctctggtcca
ggtgatattctggtgtttttgcctggagagcgagaaattcgcgaggcggcggaggtgttg
cgccaagttaatcagcaaggtttggaggtgttaccactgtttgcgcgcatgtcgcaagct
gatcaggagcgtattttcaagccgagcaccaatcttcgtcgagtcattctcgccaccaac
gttgccgaaacgtctttgacggtaccagggattcgttttgtggtggatagcggtttggca
cgggttaagcgctattcgtggcgtaataaggtggagcagttgcagattgagccgatctcc
aaggcggcagccaatcagcgtgctggtcgttgtggtcgcttggggccgggtatctgtatt
cgtctatactccgaagaggattttaagcgccgtccggattataccgatcccgaggtgctg
cgctcttcattagcctctgtgattttgcgtatgaaggcgttgcgcttgcatgatatcgaa
gcgtttccctttgtcgataaaccaagcggccgagcgattgccgatggctatcatttactg
caggaattgggtgccttaaatgagcataatcgcttgacctcgactggtcgtatgctgtcg
cggctacccttagatcccaaaattgcacgcatgattttggctgcaaaagagcatcattgt
ttgactgaaatgtgcattatcgctgcggccttatccattcaggatccacgagaacgaccc
tttgaagcgcaggaagccagtacccaagcacatgcgaagtttcgtgataaagagtcggag
tttatttcttatttaaagctctggagctggtatcaagagcaatatgagagtcgtgagtcg
aatcgtaaattgcaacgccagttacgtaaggagtttttatccccgctacgcctaagagag
tggcaagatattcatcagcaaattaggcagttggtagaggagcaacaatggcgttttaat
caggttgacgctacctatgaggaattgcatcgagccttattaagcggcttattgggtaat
atcggtttacgcagtgaaagcgtgcgtgaatatgagggcgcccgcggtattcgctttgtg
gtgcacccgagctcctatttacagcgacgggcggcaaagtggattatggcagccgagttg
gtagaaaccacacgcctctttgcacgcaccgtggcccgggtggagccgcaatggatagag
caagcaggtcggcatttattgaaaaagctttattctgaaccacattttgatccgcgtcgc
ggtcaggtgatggtgtatgagcgagcgaccctctatggtttacagctttatcaggggcgc
aagattagttatgcacgactggaccctgcccatgcacgggagttatttattcgtgaggcc
ttggtggcgggcgcaatacgtcaaaacttgccttttttgacgcataacttgcgcttgatt
gaggagattgagcatttagaacataagtcacgtcgccaagacatcttggtggatgatgag
ttaatttatcgcttctatgatcaatatattcctcaggatatgcaccaagtggcgacgttg
gagcattggtataaaaatctctcaagcgcagagcaggctcaactaaaactgaataaagat
gagttaatgcggcatgaggctgccggtatcagtaccgagcagtttcctaagtatttagag
ctagatggtttaagcttaaaattaacttatcattttgagcctggttcacctaaagacggg
gtgaccatggaggtgccggtgtatgctttaaagcagatcaatccaatccacacgcaatgg
ttagtgccgggcatgcttaaggaaaaggtcgccctgttgttacgctcattgccgcagcgc
ttacggcgccattgtgtgccgattccagactatgccgaacaatttgtcgaggccgtgtcc
gctgcaccggccttaaaagaaaaaccgctcttatccgtcttgattgatgatatttggcag
caaacaagggtgcgggtacagagcacagattttaaagaggaaacgattccgccgcatctc
tcgatgatttataaggtggtcgatgagcatgggcggatgttgagttctagtcgtaatttg
gctttattaaaggctgagcatgcgccagccgctgaacaaagctttaaagaattactagga
gaggataggggtacgcaagccaccctagaagaccatcagcatattagcagctgggatttt
ggtgaattaccagaattactggagcttaagcgtggacgacaaaccgtggtcggttacccc
gctctcgtggatcagggtaatgattgtcgcattgatgtatttgatgagctgcatgaggcg
accgcagcgcatcgcaagggtttgatccgcctccttaaaatcgccctaaaggagcaaatt
cgctacctttcaaaaaatcttaaggcgctgccacagttaggcatgctctatctgagtcta
gggacgcaagaggagttacaagaagaaattattgattgtgcgctgattcaatcgtgttta
gctacgccatggcctagtgatgaagcaagctttaatgaacgggtgagagatgccaaaggg
cgctttggtctgttattgcaggaagtcatccgcttactgcaacaaattatgaatgaatgg
gccacggcgttaaaaaaattgaacctcataaaagcgcataaaaaggcctatgaagatata
tcacagcagcttaatacgctgatttataagggctttgtaagtcgtgttgactataatatc
ctacagcattacccacgttacctaagagcggtacaattgcgtattgataaattaaaaaat
gacccgagccgcgatcagcatttgatgcatgatgtgcagctgttgcaatcgaagtatcag
cgtcgcttatcccagcttaagggggtacctgatccgcagatggatgagtttgcttattta
ttgcaagaattacgggtggctttatttgcgcaggagttacgtacgcccatgccggtttcc
gtcaagcgtttggaaaaagcgtggcatagtatgtcacactaa
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