Oligella urethralis: CEQ07_09005
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Entry
CEQ07_09005 CDS
T05343
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
our
Oligella urethralis
Pathway
our03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
our00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ07_09005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
our03019
]
CEQ07_09005
03009 Ribosome biogenesis [BR:
our03009
]
CEQ07_09005
Enzymes [BR:
our01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEQ07_09005
Messenger RNA biogenesis [BR:
our03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEQ07_09005
Ribosome biogenesis [BR:
our03009
]
Prokaryotic type
rRNA processing factors
CEQ07_09005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
AVL71542
LinkDB
All DBs
Position
1881036..1884356
Genome browser
AA seq
1106 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDIDIESAGREQRKGNIYKGVITRIEPSLEACFINY
GHERHGFLPFKEVARSYFKEGVDLRTARIQDALHEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGISRRIEGEDRQELKEAMDKLALPQGMSIIARTAGIGRSTEELD
WDLQYLLKLWNAIDNAAKQHPAPVLIYQESSLVIRAIRDYFSPSIAEILIDTDEITSQAM
AFMQDVMPENVNRVKRYRDAVPLFSRFQIEHQIETAYARNVSLPSGGSIVVDHTEALVAI
DVNSARSTRGVDIEETALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMDDNKNQRQVEQK
LREALHFDRARVQMGKISRFGLMELSRQRLRPSLNEGSHITCPRCNGTGVIRDVESSALN
ILRLIQEEAMKENTAALHAQVPVDVATFLLNEKRADIVKIENRLNVRIVLIPNKALETPH
HHIERLRYDDNRLDDHKSSVELMPVPESVVQWREQTARLEEQEKRPSAIVKGIAHDEPIP
PKVEKTVAAATAKAAEVAERVVPKSFLQRIMSFFMRPQDTEEQATETTKKATPAKKAAAK
KNPARQGGDSAQRQPRQRNQRRTTKRGAAQETEASTPQKPRRQARPKKAAQAEAAPKQAN
QQAQEQSQSNNKRHQEQDANRNNRRSRRQPRQDNDNQAQLNQNQQQQVAEETQAQASKNE
QREQRKAAEQRTQQAQQQAIQAEANAQHELQQPAEQRRDEEEPRFLRAPARDEQKRTRQK
QPTTEAVVDEQAKAAVTTPEQAPQASEAPTHPADAATQDDATQADTRRRQNRSNQRNRRS
QKEHNAAAAALPFVPNEVMLNAPSQDYEEVSEQIAKGEIDVEELTKRAADTEQTPATEAE
TPLSVTSEPVMDSAAPAMPESATPTESLAVEDEVKPSQPVDNQPSTPAAEAEQAASEATA
AAMSTEAEVAVAPEAEATLESTLEAEVAATPESKVEPASEAAAATEDDTAITASAPADNG
TEEAEAAPVANNAEHASESLTQVIAAAGLHMIETNADAVTPIPEAAPVKLGRPRKAAKVI
ATSELVQIETNTAASTTEPTPGDANE
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttatttaatgcaacacaccaagaagaattacgcgttgcaattgttgat
gggcaaaagcttatcgacatcgatattgaaagcgctggtcgcgaacagcgtaagggcaat
atctacaagggtgtgattacccgtattgagccgagtttagaggcttgttttattaactat
ggtcacgagcgccatggttttttgccattcaaagaggttgcgcgcagctactttaaagag
ggcgtggatctacgcactgctcgcattcaagatgccctacacgaggggcaggagctaatt
gtacaggtcgaaaaggaggagcgcggtaacaaaggcgctgccctcactacctttatctcc
ttagcaggtcgctacctagtattgatgcctaataaccctcgcggcggcggtatttcacgt
cgcattgagggagaggatcgccaagagctcaaagaggcgatggataaattagcgctacca
cagggcatgagcatcatcgcccgcacggccggtatcggacgctctaccgaggaattggac
tgggatttacagtatctgttaaagctctggaatgccattgataacgcagccaaacagcac
cctgccccagtactgatttatcaggaatccagtctcgtaattcgcgcgattcgcgactat
ttctcaccgagcattgctgaaattcttatcgacacggatgagattacctcacaggccatg
gcctttatgcaggatgtgatgccggaaaatgtcaatcgagttaagcgctatcgtgatgcg
gtgccgctattctcacgcttccagattgagcatcagattgaaaccgcctatgcgcgcaat
gtctcactaccttctggcggttccattgtggtggaccacaccgaggctttagtcgccatt
gatgttaactctgcacgctcaacccgtggcgtagatattgaagagactgccttacggacc
aaccttgaagcggccgaggaggtagcgcgtcaattacgtctacgtgacttgggcggttta
attgttatcgactttattgatatggacgataataaaaaccagcgccaggttgaacaaaaa
ctgcgcgaagccttacattttgaccgtgctcgcgtccaaatgggcaaaatttcccgcttt
ggtctgatggagctatcacgtcagcgcttacgtccatcgctcaacgagggttcacatatt
acctgcccacgctgtaatggtactggtgtgattcgtgatgtggagtccagcgccttaaat
atcctgcgcctgatccaagaagaggcgatgaaggaaaataccgccgccctccatgcacag
gtgccggtggatgtagcgaccttcctattaaatgaaaaacgcgctgatattgtgaaaatt
gagaatcgtctcaatgttcgtattgtactgattcctaacaaagccctagaaaccccgcac
caccatattgagcgcttacgttacgacgataatcgcttagatgatcataaaagcagtgtg
gaattaatgccggtccctgaatcagtggtacagtggcgcgagcaaactgcccgtcttgag
gagcaggaaaaacgccccagcgctattgtgaaaggcattgcccatgatgagcctatccca
cctaaagtagaaaaaacggttgcggccgccaccgccaaagcggctgaggtagctgaacgg
gtcgtgcctaagagtttcttgcagcgcattatgtctttctttatgcgccctcaagatact
gaagaacaagcaacggaaacaacaaaaaaggcgacaccagctaaaaaagctgctgctaag
aaaaaccctgcacgccaaggtggtgactcggcgcaacgtcaaccgcgtcaacgcaatcaa
cgccgtaccactaaacgaggtgccgcgcaagaaactgaagctagcacaccacaaaagcca
cgccgtcaagcacgccctaaaaaggcagctcaggcagaggcagcgccaaaacaagccaat
cagcaagctcaagaacagagtcagtcaaataataaacgtcatcaggagcaagatgcgaat
cgcaacaatcgtcgctcgcgtcgccaaccgcgtcaagacaatgacaatcaagcgcaatta
aatcagaatcagcagcaacaagttgctgaagagacgcaagctcaagcaagcaaaaacgag
caacgcgagcagcgtaaagcggctgaacagcgaacacaacaagcgcaacagcaagctatc
caagcggaagcgaatgcgcagcatgaattacagcagccagccgagcaacgccgtgatgag
gaggagccacgctttctccgtgcaccagctcgtgacgagcaaaagcgcacgcgtcaaaag
cagccaacgacagaagctgtagttgatgaacaggctaaggcagccgtgacgacgccagag
caagcgcctcaagcaagtgaagcgccaacccacccagcagatgcggcaacgcaagacgat
gccacgcaagcggatacacgtcgccgtcaaaaccgcagtaatcagcgtaatcgtcgctct
caaaaagagcataatgcggcagcagcagccttacccttcgtgccgaatgaggtgatgtta
aatgcaccgagtcaggactatgaagaggtatctgaacaaattgccaagggtgaaattgat
gttgaggagctcactaaacgagctgccgacactgagcagacccctgcaactgaagcagaa
acaccgctcagtgtaacgagcgagccagtgatggattccgcagcgcctgcgatgccagaa
agcgccacgcccaccgagtcactagcggtggaagatgaggttaagccttcgcagccagtc
gataaccagccctcaacgcctgccgcggaagcagaacaagcagcaagtgaagcaacggcc
gcagcgatgagtacagaagctgaggttgcagttgcgcccgaagccgaggctacgttagag
tccacgcttgaagccgaggtcgcagcgacgcccgagtccaaagtcgagcctgcgtccgaa
gccgcagctgccaccgaggacgacactgccatcaccgcaagcgctccagccgacaacggc
accgaggaggctgaggctgcgcccgtcgccaacaacgcagagcatgcaagcgagagctta
acgcaagtgattgctgctgccggcttacacatgattgaaaccaacgccgatgcggtgacg
cctatccccgaagctgcacccgtcaaattgggacgaccacgcaaagcggccaaagtaatt
gccacaagcgaattagttcaaattgaaactaacacagcagcgagtaccactgagccgaca
ccgggtgatgccaacgagtaa
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