Oligella urethralis: CEQ07_09485
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Entry
CEQ07_09485 CDS
T05343
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
our
Oligella urethralis
Pathway
our03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
our00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ07_09485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
our03019
]
CEQ07_09485
Enzymes [BR:
our01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ07_09485
Messenger RNA biogenesis [BR:
our03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ07_09485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
Utp25_C
DUF2119
Motif
Other DBs
NCBI-ProteinID:
AVL71624
UniProt:
A0A2N6QG61
LinkDB
All DBs
Position
complement(1985322..1986746)
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AA seq
474 aa
AA seq
DB search
MQRHLSNNNNNSSSSDSSPAADNEQLSFEDFGLHPDLLKAIAHSGYTKPTPIQAQSIPAV
LAGRDVMGAAQTGTGKTAAFTLPVLHRIMPFASHSTSPARHPVRALILTPTRELADQVAE
NVERYCSTSALRSTAIYGGVDIRPQRDELRQGCELLIATPGRLLDHLEQKNVNLSQVGVL
VLDEADRMLDMGFMPDLERIVSYLPKQRQNLLFSATFSPDIRKLARSILNHPVEITVANN
NQTADTVTQIVYQVNAQDKRSALLYLLMTHYSEQVIVFANTKLEVNRLSRFLVQEGISAE
PIHGDRSQFERTKTLEDFKAAKVQVLVATDVAARGLDVAGLPCVINYDLPFNPEDYVHRI
GRTGRAGAKGTAIAFYDEAEESMLLANIQELVKQDLQLAQLTIPETFIERAKEQPRRSYQ
QQAKREPIDAFFYKPYEPDLSDAPAATGKPQRSHERQEPMLAVLLGGGRKSSRE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtcatttaagtaataacaataataattcaagcagctccgatagcagtcccgct
gccgacaacgagcagttatcatttgaggacttcggcttacatcccgacctgttaaaagcc
attgctcatagtggctacacaaagcccaccccaattcaggcacaatcgattccagccgta
ttggctgggcgtgatgtgatgggggcggcgcaaaccggtacgggtaagacagcggcattt
accttgccggtcttgcatcgcatcatgccttttgcgagtcacagtacctcgcccgcacgc
catcccgtgcgtgccttgattttaacgccgacccgtgaattggccgatcaggtagcagaa
aatgtcgagcgctattgtagtacctctgccttacgttccaccgccatttatggtggggtt
gatattcgtccccaacgggatgagttgcgccaaggttgcgagttattaatcgcaaccccc
ggccgtttattagatcatttagagcaaaagaatgtcaatttaagccaagtgggtgtcttg
gtgctggatgaggccgaccgtatgttggatatgggctttatgcccgatcttgagcgaatt
gtgagttatttgcctaagcaacgtcagaatctgttgttttccgctacctttagtcccgat
attcgtaaattagctcggagtattctcaaccatcccgttgaaattaccgtggcaaataac
aatcagaccgcagataccgtgactcaaatcgtctatcaagtcaatgcgcaggataagcgt
tcagccctgttgtatttgttgatgacgcattattcagagcaggtgattgtgtttgctaat
accaagctcgaagtgaatcgattaagtcgctttttggtgcaagaggggatatcggccgag
cccattcatggggatcgttcgcaatttgaacggactaagacgctagaggattttaaagcg
gctaaggtgcaggtattggtggcaacggatgtggcagcacgtggtttggatgtggccggc
ttgccttgtgtgattaactatgacttaccttttaatcccgaggattatgtgcatcgtatc
ggtagaacagggcgtgctggtgccaaagggacggccattgccttttatgatgaggccgag
gaatcaatgctattagccaatatccaggagctggttaagcaggatctgcaactagcgcaa
ttaaccattcctgagacctttattgaacgggcaaaagagcagccacgtcgctcctatcag
cagcaggcgaagcgtgaaccgattgatgcctttttctataagccgtatgagccggatcta
agtgatgcaccggcagccaccggcaaaccacaacgttcacacgaacggcaagagccaatg
ttggcggttttgctcggtggtggtagaaaatccagtcgagaataa
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