Oligella urethralis: CEQ07_09540
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Entry
CEQ07_09540 CDS
T05343
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
our
Oligella urethralis
Pathway
our03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
our00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ07_09540 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
our03019
]
CEQ07_09540 (recQ)
03400 DNA repair and recombination proteins [BR:
our03400
]
CEQ07_09540 (recQ)
Enzymes [BR:
our01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ07_09540 (recQ)
Messenger RNA biogenesis [BR:
our03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ07_09540 (recQ)
DNA repair and recombination proteins [BR:
our03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEQ07_09540 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
SaeA_1st
Fic-like_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AVL71633
LinkDB
All DBs
Position
complement(1998720..2000546)
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AA seq
608 aa
AA seq
DB search
MQSDLLSAKEVLRHVFGYDEFRSEQEAIVAHLTQGEDALILMPTGAGKSLCYQIPALLRP
GVAVVVSPLVALMHDQIDGLRALGLSALSLHAGMDWDEMRAAEAAVARGEVKFLYVAPER
FDNPRFLRLLDSLQIALFAIDEAHCVSQWGHDFRPAYLDLSILPARWPSTPRVALTATAT
ELTRQEIVERLQLQGAKQFISSFDRPNIRYELVEKTKERQQLLSFINQRHAGESGIVYCL
SRQKSEAVAAFLKQAGIRALPYHAGLSAEVRYENQRIFQQEDGVVMVSTIAFGMGINKPD
VRFVAHIDMPRSIEAYYQETGRAGRDGLPATAWLAYGLQDVMQQRKLIESSQGDAAFKQR
SMDALNAMLAFCEATSCRRQRLLAYFGETAAACGNCDICLEPPVLWDATVAAQKLLSTIY
RLQHEYGEYSGAKHLVDILHGKKTARVMQQGHDALTVFGIGRELDEAQWRGLIRQLLAAA
YLDMHSEGFRNTYSLTKKSEDLLFAKKKIWLRKIPPLSKAYSNNQMPVQNRPLFDLGPAE
TRLFEALKTWRLQEAKSNGVPAYVIFKDITLYQIVMKQPQTQADLAQIEGIGDKKISQYG
EAILALLK
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtgatttgctatcagccaaagaagtgttgcggcatgtatttggttatgatgaa
tttcgtagtgagcaagaggcgattgtagcgcatctaacgcaaggtgaggatgccttgatt
ttaatgccgactggcgctggtaagtcactttgctaccaaattcccgcattgttgcgacct
ggcgttgcggtggtggtatcgcccttggtggccttgatgcacgatcagattgatggctta
cgggcgcttggtttgtcagccctcagtttacatgcggggatggactgggatgaaatgcgt
gctgcggaagcggccgttgctcggggtgaggttaagtttttatatgtggccccggagcgt
tttgataatccacgttttttacgtctactcgatagtttgcaaatcgcgctctttgcgatt
gatgaagcgcattgcgtatcgcaatggggccatgattttcgaccagcgtatttggacttg
tcgattttgcctgcacgttggcctagcacaccgagagtcgctttaacagccaccgccacg
gagttaacgcgtcaggaaattgtcgagcgcttgcaattacaaggtgcgaagcagtttatt
agcagttttgaccgccccaatattcgttacgagctggtagaaaaaactaaagaaaggcag
cagttactcagctttatcaatcagcggcatgcaggtgaatcgggcattgtgtactgccta
tcgcgccagaaaagtgaagcagtggccgcatttttaaagcaagctggtatccgagcctta
ccgtatcatgcgggtctgagcgctgaagtgcgttatgaaaatcagcgcatcttccaacaa
gaagacggcgtggtgatggtgtcaaccattgcctttggtatggggattaataagccggat
gtgcgttttgttgcgcatatcgacatgccccgctcgattgaggcctattatcaagaaacc
gggcgcgctgggcgtgatggcttgccagccacggcttggttagcctacggcttacaagac
gtgatgcagcaacgtaaattaattgagtcttctcaaggggatgcggcgtttaagcagcga
tctatggatgccttaaatgccatgttggctttttgtgaggccacgtcttgtcggcgtcag
cgtttattagcctattttggtgagacggctgcagcttgcggtaattgtgatatttgttta
gagccaccggtcttgtgggatgcgacggttgctgctcaaaagttgttatcaaccatttac
cgattgcagcatgagtatggggagtatagcggggcgaagcatttggtggatattctgcat
ggtaaaaagaccgctcgtgtgatgcagcaagggcatgatgccctaactgtctttggcatt
ggccgtgaattggatgaggctcaatggcgtgggctgattcgtcagttgctagctgcagcc
tatttggatatgcactctgaaggctttagaaatacctatagcttaactaaaaaaagtgag
gatttattgtttgccaagaagaagatttggctaagaaaaatcccgccactcagtaaagca
tattccaataatcaaatgccggttcagaatagaccgctatttgatttagggccggctgag
acaaggctatttgaggcattaaaaacatggcgcttacaagaagcgaaaagtaatggggtg
ccggcttacgtgatctttaaagacattacactctatcagatcgtgatgaagcagcctcaa
acgcaagccgatttagcccaaattgaaggtattggtgataagaaaatcagtcagtacggt
gaggcaattttagccctcttaaaatag
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