Oligella urethralis: CEQ07_11150
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Entry
CEQ07_11150 CDS
T05343
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
our
Oligella urethralis
Pathway
our03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
our00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEQ07_11150 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
our03021
]
CEQ07_11150 (rpoC)
03400 DNA repair and recombination proteins [BR:
our03400
]
CEQ07_11150 (rpoC)
Enzymes [BR:
our01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEQ07_11150 (rpoC)
Transcription machinery [BR:
our03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEQ07_11150 (rpoC)
DNA repair and recombination proteins [BR:
our03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEQ07_11150 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
HTH_13
Motif
Other DBs
NCBI-ProteinID:
AVL71926
LinkDB
All DBs
Position
complement(2329810..2334087)
Genome browser
AA seq
1425 aa
AA seq
DB search
MNGLLSLYKQIAPDEQFDAIKIGIASPEKIRSWSYGEVRKAETINYRTIKPERDGLFCAK
IFGPTKDYECLCGKYKRLKHRGIICEKCGVEVTAAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAMCVIEPGMTPLQRGQIMTEEEYNNKVDEYGDEFVALM
GAEAIRELLRTLDIDKEAETLREELKITTSEAKLKKISKRLKVVEGFQKSGIKPEWMILE
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIESYAPDIIVRNEKRMLQ
EAVDSLMDNGRRGKAMTGQNKRQLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFHRLVAMDLVATTKAAKRLVEAQEPVVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQVES
RTLMLASNNILFPASGEPSIVPSQDIVLGLYYTTRSRINGKGEGSFFADLNELHRAYNTG
AVELQSRITVRLNEWVKDENGEFQPQLKRVETTVGRALLSEILPKGLPFSVIDKALTKKE
ISNLVSQSYRRCGLRETVIFADKLMQSGFSLATKAGISIAVDDMLVPAAKVDILAQASEE
VKAIDKQHSSGLVTTQERYNNVVDIWGKATERVTKVMMEQLATEKVLNRFDEEVDQESFN
SIYMMADSGARGSATQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVIIEDDCGTTNGYMIKAKVEGGEIIEPLRDRVL
GRVAAADIINPDTQETVITAGTMLDEDAVELIDKLGIDEVKIRTPLTCETRHGLCAQCYG
RDLGRGSLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTASVSSVETKSNGKVAF
LASMRYVTNSKGERIAISNNGELLIVDPTTERERERHRVPYGATVMVGDGDEVKAGAKLA
TWDPLTRPIVSEYAGQVKFDNIEEGVNVAQQTDEVTGLSTLVVITPKRATRANVRPQIKM
LDEKGEELKILGPNNTSHSVAISFPVGALIRVRDGQEIGVGEIVARIPVDSQKTRDITGG
LPRVVELFEARSPKDAGILADVSGVVSFGKDTKGKQRLVITDTDGQPHEFLIPKEKHIQV
QNGRVVHQGELIVDGPADPHDILRLKGIEMLAQYIIDEVQEVYRLQGVKINDKHIEVIVR
QMLRRVVVEDAGDTSFIPGEQVERSALLDENDRVQAEGGQPATYQNILLGITKASLSTDS
FISAASFQETTRVLTEAAVMGKRDELRGLKENVIVGRLIPAGTGLAYHLARHQKIDSRSG
FEHSSSTEQENPFIDPVSLESALGATAEAVTTELDSSKESGPTEE
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgaatggtttattaagtctatataagcaaattgcccctgatgagcagtttgatgcaatt
aaaattggtatcgcttcaccggaaaagatccgttcgtggtcttacggtgaggtgcgtaag
gctgaaaccatcaactaccgcaccattaagccggagcgtgacggtctgttttgtgccaag
attttcggcccgaccaaagactatgagtgtttgtgcggtaagtataagcgcttaaagcat
cgcggcattatttgtgaaaagtgtggcgtggaagtaactgcggccaaagtacgtcgtgag
cgtatggggcatattgaactagccagtcccgttgcccatatttggttcttaaaaagcctg
ccttctcgtttaggtatggtgcttgatatgaccttgcgtgatattgagcgcgtcttatac
tttgaggccatgtgcgtgattgagccaggcatgacgccgttacagcgcggtcaaatcatg
accgaagaggagtacaacaataaggtcgatgagtacggtgatgagttcgttgcgctgatg
ggcgctgaggccatccgcgagttattgcgtacgctagatatcgataaagaagcggaaacc
ttacgcgaagagcttaaaataacgacctctgaagctaagcttaagaaaatttccaaacgt
cttaaagtggttgagggcttccaaaaatcggggattaagcctgagtggatgattcttgag
gtgttacctgtgctgccaccggatttacgtcctttggtaccgcttgatggtggccgtttc
gcgacttcggatctgaacgatttataccgtcgcgtcatcaaccgtaataaccgtttgaag
cgtctgattgagtcttatgcgcctgatattatcgtacgcaatgaaaagcgtatgttgcag
gaagcggttgactcgttgatggataatggtcgtcgcggtaaggccatgacgggtcagaat
aagcgtcaattaaagtcacttgccgatatgattaagggtaagggcggtcgcttccgtcag
aacctgttaggtaagcgtgtggattactccggtcgttcggtgattgtggtcggtccgcag
cttaaactacatcaatgtggtttaccgaaattgatggccttagagctctttaagccattt
attttccaccgtttagtggcgatggatttagtggcaacgacaaaagcagccaagcgctta
gtggaggctcaagagccggtcgtttgggatattcttgaggaagtgattcgtgagcacccg
gtactattaaaccgtgcgccaacgctgcaccgtcttggtatccaggcctttgaaccggta
ctgattgagggtaaagcgattcaattgcacccgctagtgtgtgcggcctttaacgcggac
tttgacggtgaccaaatggcggtacacgtgcccttatcgattgaggcacaggtagaatcg
cgtactttgatgttagcgtctaataacatcttattcccagccagtggtgagccttcgatt
gtaccttctcaagatattgtgttaggtctttactacaccactcgttcacgtattaacggt
aagggtgagggtagcttctttgctgacctgaatgaattgcatcgtgcctacaataccggt
gcggttgaattacaaagccgtattacggtgcgcttaaatgagtgggttaaggatgaaaac
ggtgagttccagccgcaattaaaacgtgttgaaactacggttggtcgtgctttactgtct
gaaattttacctaagggtctgccgtttagtgttatcgacaaagcgctgactaaaaaggaa
atttctaatttggtgagccaatcttatcgtcgttgtggtctgcgagaaaccgttattttt
gccgataaactgatgcaatctggtttcagtttagcgactaaagcgggtatctccattgca
gtggacgatatgctagtgcctgctgctaaagtcgatatcttggcgcaagcctctgaagag
gttaaagccattgataaacagcactcttctggtttggtaacaacccaagagcgttataac
aacgtggttgatatttggggtaaagccactgagcgcgtcacgaaggtgatgatggagcaa
ttagccactgaaaaagtgctgaatcgctttgatgaagaggtggaccaagagtcatttaac
tccatttatatgatggctgactccggtgctcgaggttcggctacgcagattcgtcagtta
gcgggtatgcgaggcttgatggctaagccggacggttcaattattgaaacgccgattact
gcaaacttccgtgagggtctgaacgtacttcagtactttatttcaacccacggtgcgcgt
aagggtcttgccgatacagcgttaaaaactgcgaactcaggttacttaactcgtcgtctt
gttgacgtgactcaagacttggtgattattgaggacgattgtggtaccaccaatggctat
atgatcaaagccaaggttgagggcggtgaaattatcgagcctctacgcgatcgcgtctta
ggtcgtgtcgctgccgctgatattattaatccagatacgcaagagacagtgatcacagct
ggcaccatgctagatgaggatgcggttgagttaattgataaactcggcattgacgaggtt
aagattcgcacgccattgacatgtgaaacacgtcatggtttatgtgctcaatgttatggt
cgcgatttaggtcgcggttcgctagtcaaccgtggtgaggcagtgggtgtgattgctgct
caatctattggtgagccaggtactcagttaaccatgcgtaccttccacatcggtggtgcg
gcctcacgtactgctagcgtgtctagcgttgaaacgaagtctaacggtaaggtggctttc
ttagcctcgatgcgttatgtgaccaatagcaaaggcgaacgtattgcgatctctaacaat
ggtgagctattaattgttgatccgacaactgagcgtgaacgtgagcgtcatcgtgtacct
tatggtgcgacggtgatggttggtgacggtgatgaggtaaaagcgggcgctaaattagcc
acttgggatccattaactcgtccgattgtgtctgagtatgcgggtcaggtgaaattcgat
aatatcgaagagggcgtgaacgtagcccagcaaaccgacgaagtgaccggtttatcgacc
ttagtcgtgattacacctaagcgtgctacacgtgctaatgtacgtccgcagatcaagatg
ttggatgagaaaggtgaggagcttaaaatcctcggtccaaacaataccagccatagcgta
gcgattagcttcccggtcggtgccttgattcgagtacgtgatggccaggagatcggtgtg
ggtgagatcgtggctcgtatccctgtggattctcagaaaacccgtgatattaccgggggt
ctaccacgtgtggttgagctatttgaagcccgttcacctaaggatgccggtattcttgct
gatgtttctggggtggtttcctttggtaaggacactaaaggtaagcagcgtttagtgatt
actgataccgatggtcagccgcatgaattcttgattcctaaggaaaagcatattcaggta
caaaatggtcgcgtggttcaccaaggtgagttaattgttgacggtcctgccgacccacat
gatattttgcgcctcaaaggtattgagatgcttgctcagtacattattgatgaggtacaa
gaggtttaccgcttacagggtgtgaagatcaacgataagcacattgaggtgattgtgcgt
cagatgctacgtcgtgtagtggttgaggatgctggcgatactagctttatcccgggtgag
caggtggagcgttcagccttgctagatgaaaacgatcgggttcaggctgagggcggtcaa
ccggcgacttatcagaatatcctcttgggtattaccaaagcgtcactctcgacagactcc
ttcatctctgccgcttccttccaggaaacaacccgcgtactaactgaagctgcggtgatg
ggtaaacgtgatgagctacgtggtctaaaagaaaacgtgattgtgggtcgcttgatccct
gccggtactggtttagcttatcacttagcacgtcatcagaagatcgacagtcgtagtggc
tttgagcacagcagttctactgaacaagaaaacccctttattgatccggtttctcttgaa
agtgccttaggtgcgactgcagaagcagtgacgactgagctagatagcagcaaagagtca
ggccctactgaagagtaa
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integrated database retrieval system
