Oscillibacter valericigenes: OBV_20860
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Entry
OBV_20860 CDS
T01636
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03030
DNA replication
ova03430
Mismatch repair
ova03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OBV_20860 (dnaE)
03430 Mismatch repair
OBV_20860 (dnaE)
03440 Homologous recombination
OBV_20860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ova03032
]
OBV_20860 (dnaE)
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_20860 (dnaE)
Enzymes [BR:
ova01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OBV_20860 (dnaE)
DNA replication proteins [BR:
ova03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OBV_20860 (dnaE)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OBV_20860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
DUF655
T2SSK
Motif
Other DBs
NCBI-ProteinID:
BAK99284
LinkDB
All DBs
Position
1972209..1975700
Genome browser
AA seq
1163 aa
AA seq
DB search
MSFVHLHVHTEFSLLDGACRIKELPGVLKEMGQTACAITDHGVMYGVIDFYRACKDAGVK
PIIGCEVYVAPRGRTRFQKQHEFDAESRHLVLLCENEEGYRNLSYIVSMAWTEGFYIKPR
VDMGLLQEHHQGLIALSACLAGEIPRRLRNGEYDTAKAVALEMADIFGPDHFYLELQDHG
IPDQQKVNRGLLKLHQETGLPMVCTNDSHYLRKEDADAHDVLLCIQTGKLLADENRMRYE
PRNFYLRSEQEMRALFEGYEDAVDNTGKIAERCNVEFVFGKYQLPEFKLPEGYDSYTYLK
ELCDRGFAQRYGDAHPEYRRQMSYELEMIEKMGFTDYFLIVSDFVRYAKSAGIPVGPGRG
SAAGSMVSYCLYITDVEPMRFGLYFERFLNPERVSMPDIDMDFGDVRRGEVVDYVRRKYG
DDHVAQIVTFGTMAARGVIRDVGRVMGLPYAEVDTIAKQVPNTLHITLSDALRLSKPLSD
LYEGDDNVKTLIDTARKLEGMPRNASTHAAGVVITKKPVYEYVPLAKNDDAVVCQYIMTT
LEELGLLKMDFLGLRNLTVLDDAVKMVQAERPGFRLEDIPEDDAPTYEMLGQGKTIGVFQ
MESTGMTGVCVGLKPRSIEDISSIIALYRPGPMDSIPKFIACAQNPKKISYLHPSLEPIL
SITYGCILYQEQVIEIFRRLAGYSLGQADMVRRAISKKKAAQIVREKDAFIRGDRERNIP
GCVANGIPEETAEAIYQEIYDFANYAFNKAHSVSYAVVAYQTAYFKCHFPKEYMAALLTS
VLDNSAKIAGYITECRDWGIKLLPPDINCSCDTFTVEEGGIRFGLAAVKNIGRGFIQAVM
REREDRPFSSLSDFCARMNGSDMNKRAVENLIRSGAFDGFGAKRSQLIRVFETVMDSIAN
ASRQNVEGQLDFFSMAAGDAAEPKPPKEADLPDIPEFSQQELMNMEKETTGLYLSGHPMD
AYRDEVKRLNAPAIASILDDFAQEGGPTRFADGQRVRIAGVVTSSKTKTTKNNSLMAYVT
MEDDTAAIELLCFSRTLDACGACLQENQAVEVQGKLSVRDEKAPQILCDSAVPLGGGAPL
PAPVPAESEKKLAGGSVLYLKFPGKDSPELHHMKLVFEMFPGSTPVKLVMADTRKVFGIR
LLLHQALLQEARETLGEENVVVK
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgtccatttacatgttcatacggagttcagcctgctggacggcgcgtgccgc
atcaaggagctgccgggagtcttgaaggagatgggccagaccgcctgcgccatcacggac
cacggggtcatgtacggcgtgatcgacttttaccgcgcctgcaaggacgcgggcgtcaag
cccattatcggctgcgaggtctatgttgcgcccagaggccggacccgatttcaaaagcag
catgagttcgacgcggagagccgccatctggttctgttgtgtgaaaatgaggagggatat
cgaaacctctcttatatagtctccatggcgtggaccgagggattttacatcaaaccccgg
gtggatatggggcttttgcaggaacaccatcaggggctgattgccctgtccgcctgcctt
gccggcgagattccccggcggcttcggaacggggaatatgacaccgccaaagccgtggca
ctggaaatggcggatattttcggaccggaccatttctatctggaactgcaggaccatggc
atccccgaccagcagaaggtgaaccgggggcttttgaagctccatcaggagacggggctt
cccatggtctgcacgaacgactcccactacctgcgcaaagaggacgcggatgcccacgac
gtgctgctttgcatccagacggggaagctgctggcggacgaaaaccggatgcgctatgaa
ccgcggaatttctacctccgctccgagcaggagatgcgcgccctgtttgagggctacgag
gatgcggtggacaacaccgggaagatcgctgagcggtgcaacgtggagttcgtcttcggg
aaatatcagctgccggaatttaagcttccggagggttatgactcctatacctacctcaaa
gagctgtgcgaccggggctttgcgcagcgatatggcgacgcccatccggaatatcgccga
cagatgagttatgaactggaaatgatcgagaagatgggctttacggactactttctcatc
gtctccgactttgtgcgctacgccaagagcgcgggcatccccgtgggtccggggcgcggc
agcgccgccggaagtatggtgagctattgcctgtatatcacggatgtcgagccgatgcgg
ttcggactgtattttgaacggtttctgaatcccgagcgggtcagtatgccggatatcgac
atggatttcggcgatgtccgccggggcgaggtggtggactatgtccgccggaaatacggc
gacgaccacgtggcccagatcgtgacctttggcactatggctgcccggggcgtgatccgg
gacgttggccgggtgatggggctgccctacgccgaggtggataccatcgccaagcaggta
cccaacaccctgcatatcaccctcagcgacgcgctgcggctttcaaagcccctcagcgat
ctctacgagggcgatgacaacgtgaagaccctgatcgacacggcccgcaagctggagggg
atgccccgcaacgcctccacccatgccgcgggcgtggtcatcacgaaaaagccagtgtac
gagtatgtgcccctggcaaaaaacgacgatgcggtggtttgccagtatatcatgaccact
ctggaggaactgggccttttaaaaatggattttctgggcctgcggaacctgacggtgctg
gacgacgcggtaaaaatggttcaggcggagcgccccggtttccggctggaggacatcccg
gaggacgacgcgcccacctacgagatgttgggacagggaaagaccatcggcgtgttccaa
atggaatccaccggcatgaccggcgtatgtgtggggctgaaacctcgcagcatcgaagat
atttcatccattatcgctctctaccgtcccggccccatggactccattccaaagttcatc
gcctgtgcccagaatccaaaaaaaatctcctatcttcacccatcgctggagccgattttg
tccattacctacgggtgcattttatatcaggagcaggtcattgagattttccgccggctg
gcggggtactccctgggccaggcggatatggtgcgccgggccatctccaaaaagaaggcc
gcccagatcgtgcgggaaaaggacgcgtttatccgcggcgacagggagcggaatatcccc
gggtgcgtggcaaacggtatcccggaggagacggccgaggccatctatcaggagatttac
gactttgcaaactacgcctttaacaaggcgcattccgtttcctatgcggtggtagcctac
cagaccgcctattttaagtgccattttccgaaggaatatatggccgcgctgcttaccagc
gtcctggataactccgccaagatcgcgggatacatcacggaatgccgcgactggggcatt
aagctcctgccaccggacatcaattgctcctgcgacaccttcacggtggaagagggcggt
atccggtttggtctggctgccgtcaaaaacatcgggaggggatttattcaggctgtgatg
cgggagcgggaggatcggcccttttcctccctcagcgacttctgcgcgcggatgaacggc
agcgacatgaacaagcgggcggtggaaaacctgatccgctccggtgcgtttgacggcttt
ggggcgaagagatcccagctgatccgtgttttcgagacggtaatggactccattgccaac
gccagccgccagaacgtggaggggcagctcgatttcttctccatggcggcgggtgacgcg
gcggaaccaaaaccgccgaaggaggcggacctgccggacatcccggagttttcccagcag
gagctgatgaatatggagaaggagaccacaggcctctacctctccggtcatcccatggat
gcctatcgggatgaggtgaagcggctgaacgcacccgcgatcgcctccattttggacgat
tttgcccaggagggcggccccacccggtttgccgacggccagcgggtccggattgccggc
gtggtcacctcaagtaagacgaaaaccacgaagaacaactccctgatggcctacgtgaca
atggaggacgacaccgccgccatcgaacttttatgcttttcccggacgctggacgcctgc
ggcgcgtgcctgcaggagaatcaggcagtggaggtgcagggaaagctctccgtccgggat
gaaaaggcccctcagattctgtgcgattccgcggtcccgctgggcggcggcgcgccgctt
ccggctccggttccggcggagagtgaaaagaaactggcggggggcagtgtcctctatctg
aaattcccaggaaaggacagccccgagcttcatcacatgaagctggtgtttgagatgttt
cccggcagcacgccggtgaagctggtgatggcggacacccggaaagtgttcggtattcgg
ctgctgctccatcaggcgcttttgcaggaggcgagagagactctgggcgaggagaacgtg
gttgtcaaataa
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