Oscillibacter valericigenes: OBV_29630
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Entry
OBV_29630 CDS
T01636
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OBV_29630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ova03021
]
OBV_29630 (rpoC)
03400 DNA repair and recombination proteins [BR:
ova03400
]
OBV_29630 (rpoC)
Enzymes [BR:
ova01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OBV_29630 (rpoC)
Transcription machinery [BR:
ova03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OBV_29630 (rpoC)
DNA repair and recombination proteins [BR:
ova03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OBV_29630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAL00162
LinkDB
All DBs
Position
complement(2799408..2803199)
Genome browser
AA seq
1263 aa
AA seq
DB search
MIDTNTGNNVAFDAIKIGMASPEQILEWSYGEVKKPETINYRTLKPERDGLFCERIFGPT
KDWECHCGKYKKIRYKGKICDRCGVEITRAKVRRERMGHIELATPVSHIWYFKGIPSRMG
LLLDISPRILEKVLYFANYIVTDPGETPLMKNQILSEKEYRDYREKYEDDFQAGMGAEAV
KKLLQDVDLDALSQQLHTELKDASGQKKARIVKRLEVVDAFRISHNKPEWMVIDVLPVIP
PELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIQLNAPDIIVRNEKRMLQEAVDAL
IDNGRRGRAVTGANNRALKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQC
GVPKEMAVELFRPFIMKKLVEDGTANNIKSAKKMVDKGTAEVWDALDVIIKDHPVMLNRA
PTLHRLGIQAFEPVLVDGRALKLHPLNCTAFNADFDGDQMAIHVPLSAEAQAEARILMLS
ANNLLRPQDGGPVTVPTQDMVLGSYYLTYERIGKAEVGAETIYVDDAGGTGLTAGTEVDA
DEFLAANKAAKDAGKQEATFLPVHVYAGEDEALMAYNSRVIGPHCPILVRVTRVVDGVQH
TGIIRGTAGRIIFNRNIPQDLGFADRSDPASILDYEIMFQCGKKELGKIVDRTINKHGFT
IAAEVLDAIKATGYKYSTQAAITVSIADMTVPPVKYELVDQTEKRVLDIESQYKMGFMTN
QERYKQVVAEWEKTTNEVSDALQKNLDRYNPIFMMADSGARGSMKQIRQLAGMRGLIANT
AGRTIEIPIKANYREGLTALEYFISSRGARKGLADTALRTADSGYLTRRMVDVSQDVIIR
EQDCGSIHGIRVSEISENGQVIEKFSDRLRGRFLVSNVYDADTGAELISNEKMMDESDAK
LLETHHWIQKNYREGDACSFDPAVEGSKPMVMIRTVLTCRAHSGVCAKCYGMNLATSQPV
GPGEAVGIIAAQSIGEPGTQLTMRTFHTGGLAGGDITQGLPRVEELFEARKPKRMAQLAE
IAGVIKFEEATKGSLLNIIITADDGDTRTYAVPHTGLLVKDGDRVAQGTALTYGALNPHE
VLRLRGSDAVYNYLIQEVLRVYRQQGVDINDKHIEVIVRQMMRKVRLEDAGDTKLLDGSM
VDILDLDDTNAEIDRRNAAGERREDGELLRHAEGTQLLMGITKASLATDSFLSAASFQET
TKVLTEAAIKGKIDHLLGLKENVIIGKLIPAGTGLAAYKEFAEELVPDSVASGAEDEIPV
FED
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgattgacacgaataccggcaacaatgttgcttttgatgccattaagatcggcatggcc
tctcctgagcagattctggagtggtcctacggcgaagtcaagaagccggagacgatcaac
taccgtacgttgaagcccgagcgggacggcctgttctgcgaaaggatcttcgggcccacc
aaggattgggagtgccattgcggtaaatataagaaaatccgctataagggaaaaatctgc
gaccgctgcggcgtggagattacccgggccaaggtgcgccgcgaacgcatgggccacatt
gagctggccacccccgtttcccacatctggtatttcaagggcatcccctcccggatgggc
ctgctgctggacatcagcccccggattctggagaaggtcctgtattttgccaactatatt
gtcaccgaccccggggagaccccgctgatgaagaatcagattctctccgagaaggagtac
cgggactatcgggagaagtatgaggacgacttccaggccggcatgggcgcggaagccgtc
aagaaactgcttcaggacgtggatctggacgccctctcccagcagctccacaccgagctg
aaggacgcatccggccagaagaaggcccggattgtcaagcggctggaggtggtggacgct
ttccgcatctcccacaacaagccggagtggatggtcatcgacgtactgccggtgattccg
ccggaactgcgccccatggtgcagctggacggcggccggttcgcaacgtccgatctgaat
gatctctatcgccgggtcattaaccggaacaaccgcctcaagcggctgatccagctgaat
gcccccgacatcatcgtccgcaatgagaagcggatgcttcaggaggccgtggacgcgctg
atcgacaacggccgccggggccgcgccgtcaccggcgccaacaaccgagcgctgaaatcc
ctcagtgatctgctgaagggcaaacagggccgcttccgccagaaccttctgggcaaacgc
gtggactactccggccgtagcgtgattgtggtgggtcctgaactgaagatctaccagtgc
ggcgtacccaaggagatggccgtggagctgttccggcctttcatcatgaagaagctggtg
gaggacggtaccgccaacaacattaagtccgccaagaagatggtggacaagggcaccgcc
gaggtgtgggatgccctggacgtcatcattaaggaccaccccgttatgctgaaccgcgcg
cctacgctgcaccgtctgggtattcaggctttcgagccagtgctggtggatggccgcgca
ctgaagctgcatcctttgaactgtaccgcgtttaacgccgacttcgacggcgatcagatg
gcaatccatgtgcctttgtccgccgaggcacaggccgaggcccgtatcctgatgctctcc
gccaacaacctcctgagacctcaggatggcggccccgtcaccgttcccacgcaggatatg
gtgctgggctcctactacctgacctatgagcgcatcggcaaagccgaggttggcgcggag
accatctatgtggatgatgccggagggaccggtctgaccgcaggtacagaagtggacgcc
gacgagtttcttgctgccaataaggcggcaaaggatgccggaaagcaggaggccaccttc
ctgcctgtccatgtgtacgccggtgaggacgaggccctgatggcctataacagccgcgtc
atcggaccacactgccccattttggtacgcgtcacccgggtggtggacggcgtgcagcat
accgggattatccggggtactgcgggccggattatctttaaccgcaatattccccaggat
ctgggctttgcggaccgcagtgatcccgccagcatcctggattacgaaatcatgttccag
tgcggcaagaaggaactgggcaagatcgtggaccgcaccatcaataagcacgggtttacc
atcgccgccgaggtgctggatgccatcaaggccaccggctataaatactccacgcaggcc
gccatcaccgtttccatcgcggacatgaccgtgcctcccgtgaaatatgagctggtcgac
cagaccgaaaagcgggtcctggacatcgagagccagtacaaaatgggcttcatgaccaac
caggagcgctataagcaggtggtagccgagtgggagaagaccaccaacgaggtctccgac
gctttgcagaagaacctggaccgctataacccaatcttcatgatggcggactccggcgcc
cgcggatccatgaagcagattcgtcagctggccggcatgcgcggcctgattgcaaatacc
gccggacgcaccattgaaatccccatcaaggcaaactaccgcgagggcctgaccgccctg
gagtacttcatttcctccagaggcgcccgaaagggtctggccgataccgctcttcgtact
gcggactccggttacctgacccgccgcatggtggacgtctctcaggacgtcatcatccga
gagcaggactgcggttccatacacggtatccgggtctccgagatcagcgagaacggtcag
gttattgaaaaattctccgaccgtctgcgtggccgcttcctggtgagcaatgtctacgac
gcggacaccggcgcggaactgatttccaacgagaagatgatggatgagagcgacgcgaag
cttctggagacccatcactggattcagaagaactaccgcgagggcgatgcctgctccttt
gacccggcagtggaggggagcaagcccatggtcatgatccgtaccgtcctgacctgccgc
gctcacagcggcgtgtgcgccaagtgctacggtatgaacctggcaacatcccagcccgtg
ggccccggcgaggcggttggcatcattgccgcccagtccatcggcgagcccggaacgcag
ctgaccatgcgtacgttccataccggcggtctggccggaggcgacatcacccagggcctt
ccccgtgtcgaggaactgtttgaggcccgtaagcccaagcggatggcccaactggcagag
atcgcgggcgttatcaagtttgaggaagccacaaagggcagccttctgaacatcattatc
accgccgacgatggtgatactcgaacctatgcggtgccccataccggccttctggtaaaa
gacggcgaccgggtggcgcagggtactgccctgacctacggcgcgctgaatccccatgag
gtcctgcgtctgcggggcagcgacgcggtttacaactacctcattcaggaagttctgcgg
gtataccgccagcagggcgtggatatcaacgataagcatatcgaagtcattgtccgccag
atgatgcgcaaggtccgtctggaggacgccggtgacaccaagctgctggacggttccatg
gtagacattctggatctggacgacaccaacgcggagatcgaccgccgcaatgctgccgga
gagcgccgggaggacggcgagcttttgcgccacgcggagggcacccaactgctgatgggc
attaccaaggcatccctggccaccgactctttcctgtccgctgcttctttccaggagacc
accaaggttttgaccgaggcagccatcaagggcaagatcgaccacctgctgggcctgaag
gagaacgtcattatcggcaagctgatccctgccggcaccggtcttgcggcctacaaggaa
tttgccgaggaactggtacccgattcagtcgcctccggtgcggaggacgagatccctgta
tttgaggactga
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integrated database retrieval system
