Oscillibacter valericigenes: OBV_31920
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Entry
OBV_31920 CDS
T01636
Name
(GenBank) protein RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ova
Oscillibacter valericigenes
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ova03016
]
OBV_31920
Enzymes [BR:
ova01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OBV_31920
Transfer RNA biogenesis [BR:
ova03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OBV_31920
Prokaryotic type
tRNA splicing ligases
OBV_31920
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAL00391
LinkDB
All DBs
Position
3027261..3028469
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AA seq
402 aa
AA seq
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MIEVTGAHNSALCYTDELEKTAAGQIRAVCDQAAFAESKIRIMPDVHAGMGCTIGTTMTI
TDKIVPGMVGVDIGCGMETVRLAEREIDFFKLDALIRREIPCGREIRDVPHALNSEIDLT
KLRCSPYVKLERARRSIGTLGGGNHFIEVDRTERGELYLVVHSGSRHIGNEVAKYYQDEG
FHALCGNARFQIDETIRQMKESGDTKEIHKTIKELKKRRAMLTPIPKDLAYVEGLLFDDY
IHDMRIIQQFAVLNRKAMTEVILRGMGLTRVEEFTTIHNYIDTDAMILRKGAVSAKSGEK
LLIPINMRDGSLICIGKGNPDWNCSAPHGAGRLMSRKDAFSTLSMEEYKTEMEGVYTTCV
VPDTLDESPMAYKSMEEIVAQIGPTTEIVERIRPIYNFKALE
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagtaactggcgcgcacaacagcgccctctgctatacagacgaattggaaaag
acggcggctggtcagatcagggccgtctgcgatcaggcagcgtttgccgaaagcaagata
cgtattatgccggatgtccacgccggtatgggctgcaccatcggcaccaccatgaccatc
acggacaagatcgtccccggtatggtgggtgtggatattggctgtgggatggagactgta
cgccttgcagagcgtgaaatagacttcttcaagctggacgcgctgatccgccgagaaatc
ccctgcggtcgtgaaattcgtgatgtgccccacgccctgaacagcgagatcgatctgacg
aagctgcgctgctcgccctatgtaaagctggagcgggcacgccggagcatcggcacactg
ggcggcggcaatcacttcatcgaggtggacaggaccgaacgcggtgagctatatctcgtc
gtccactccggcagccgccatatcggcaatgaggtggcaaaatactatcaggacgagggc
tttcacgcgctgtgtggcaacgcccgctttcaaatcgatgaaacaatccggcaaatgaaa
gaatccggcgacacaaaggaaatacacaagacgatcaaggaactgaaaaagcggcgggcc
atgttgacacccattcccaaggacctggcctatgtggagggcttgttgttcgatgactat
atccatgatatgcggattatccagcagttcgccgtgctaaaccgcaaggcgatgacagag
gttatcctgcggggtatgggacttacccgcgtggaggagtttactaccatccataactat
attgacacagatgccatgatccttcgcaagggcgcggtgtcggcaaagtcgggggaaaag
cttttgatccccatcaatatgcgggacggcagcctaatctgtattggaaagggaaatccg
gactggaactgctcggctcctcacggtgccggtcgacttatgagtcggaaagatgccttt
tccacactatccatggaggaatacaaaacagaaatggagggcgtttataccacctgcgtt
gtgccggacacgctggatgaatccccgatggcatacaaaagcatggaagaaatcgtcgca
cagattggccccaccacagaaattgtggagcgaatccggccgatctataatttcaaggcg
ttggagtag
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