Oscillibacter valericigenes: OBV_35960
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Entry
OBV_35960 CDS
T01636
Name
(GenBank) putative RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OBV_35960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ova03019
]
OBV_35960
03009 Ribosome biogenesis [BR:
ova03009
]
OBV_35960
Enzymes [BR:
ova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OBV_35960
Messenger RNA biogenesis [BR:
ova03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OBV_35960
Ribosome biogenesis [BR:
ova03009
]
Prokaryotic type
rRNA helicases
OBV_35960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
Myb_DNA-bind_7
Motif
Other DBs
NCBI-ProteinID:
BAL00795
LinkDB
All DBs
Position
complement(3390925..3392094)
Genome browser
AA seq
389 aa
AA seq
DB search
MELTQGVRFDRLGLSPEIMRAIKKRNIELSTPVQAGCIPPMLAWKDVIAKAPTGTGKTFA
YGIPIVEHIDPEDEAVQAVILSPTRELAIQITDELRDIAAFRPGVRMVCLYGGQPIGRQI
DILKRKPQIVVATPGRLADHMKRRTVRVDTARTVILDEADRMLDMGFIHDVTRLLDRMNK
RKNLGMFSATISREVMDIAWVYQRDAEEITVRADEQNKPDILQYRLEVSYDGKAEAIARI
MDGGNYDRAMAFCNTKGSTERIAKFLQMRGMDAECIHGDIPQKKREQVMDKFRKGGLRVF
VATDVAARGIDVDDVDVVFNCDVPDENQDYVHRIGRTGRAKRHGIAVSLIADYPAKMRID
NIAKCTANTIIPARLDESGRLVELSAADK
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggaattgacacaaggcgtccggttcgaccgtctcggactgtcaccggagattatgcgc
gcaataaaaaagcgcaatatcgaactctccacccccgtgcaggccgggtgcatccccccg
atgctggcgtggaaggacgtgattgcaaaggctcccaccggtaccggcaagacctttgcg
tacgggattcccatcgtggaacacatcgacccggaggatgaggcggttcaggcggttatt
ctgtcgcccacccgggagctggcgatccagatcaccgatgagctaagggacatcgcggcg
ttccgccccggtgtgaggatggtgtgcctttacggcggacagcccatcggcaggcagatt
gacattttaaaaagaaagccccagattgtcgtcgccacgccgggccgtctggcggaccac
atgaaacgccgcacggttcgggtggacaccgcccggaccgtgatactggacgaggcggac
cgaatgctggacatgggctttatccatgatgtgacccgtctgctggaccggatgaacaag
cggaagaatctgggcatgttttccgccacgatctcccgagaggtgatggacatcgcctgg
gtctatcagcgggatgcggaggagattaccgtccgggcggacgagcagaacaagccggat
atcctccagtaccgactggaggtcagctacgacggcaaggcggaggccatcgccagaatt
atggacggagggaactacgaccgggccatggctttttgcaatacgaaagggtccacggaa
cgcatcgccaaatttttgcagatgcggggcatggatgccgagtgcatccacggcgacatt
ccccagaagaagcgggagcaggtgatggacaaattccgcaaaggggggctgagggtgttc
gtggcgaccgacgtggcggcccggggcatcgacgtggacgacgtggacgtggtgttcaac
tgcgacgtgcccgatgagaatcaggactatgtccaccgtatcggccgtaccggccgggca
aagcgtcacggcattgcggtgagtctgatcgcggactacccggcaaaaatgcgaatcgac
aacatcgccaaatgtaccgccaataccatcatccccgcccgtctggacgaaagcgggcgg
ctggtggagctttctgcggcggataaataa
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