Oscillibacter valericigenes: OBV_36170
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Entry
OBV_36170 CDS
T01636
Name
(GenBank) putative RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ova
Oscillibacter valericigenes
Pathway
ova03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ova00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OBV_36170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ova03019
]
OBV_36170
Enzymes [BR:
ova01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OBV_36170
Messenger RNA biogenesis [BR:
ova03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OBV_36170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UTP25_NTPase-like
UvrD-helicase
ERCC3_RAD25_C
Shikimate_DH
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
BAL00816
LinkDB
All DBs
Position
complement(3418350..3419657)
Genome browser
AA seq
435 aa
AA seq
DB search
MTFKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPIL
QNLASERRKGIKALILTPTRELAIQIQENFEHYGTHLPLRCTVIFGGVSQVPQVERLRRG
VDILIATPGRLCDLINQGYVDISQIEVFVLDEADRMLDMGFIRDVKKVLNALPKKRQTLL
FSATMPKEIEVLANTILHDPVTVKVDPVTSTASSIHQHVYLIDKGNKRRLLAKLLRGREV
GSALVFTRTKHAADKVVKELAETGMVAMAIHGNKSQNARQTALKRFKSGDIKILVATDIA
ARGIDIPELSHVFNYELPNEPETYIHRIGRTGRAGLGGVAISFCDYDEIPYLKDIEKLMG
QTIPEEKSEWPMTILQKSEKAPQKRYGFGNPHTTATAKPRRSHAPASDPFSYARPHGVSA
RQHSRAAGSRKRRER
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaactgaacctcacagcacctatcttaaaggcggttgaccgtcaggga
tacactacaccgactcccattcagcaaaaagcaattcctattctattgcagaagagagac
ctgatcggctgcgcacagaccggcacaggcaagaccgctgcctttgcccttccaattctc
cagaaccttgcatcggaacggagaaaaggaatcaaagcgttaatactgacgcctacaagg
gaactggctattcaaattcaggaaaactttgagcactatggaacccatctgccccttcgc
tgcaccgtgatctttggcggtgtcagccaggtgccgcaagttgaaagactgcggcgcggg
gttgatatcctgattgcgacgccggggcggctctgcgacctgattaatcagggctatgtt
gatatctctcagattgaagtttttgtcttggatgaagccgaccggatgctggatatgggc
tttatccgagatgtaaaaaaagtcctgaacgcactgccaaagaaacggcagacgcttctt
ttcagcgcaacaatgccaaaggagatcgaggtccttgcaaacaccattcttcacgatccg
gttacggtaaaagtcgatcccgtgaccagcacggcttcttccattcaccagcatgtgtac
ttgattgacaagggcaataagcgccgcttgctggcaaagctgcttcgtggccgtgaggtt
ggaagcgcgctggttttcacacgcacaaagcacgccgccgacaaggtagtcaaggaactg
gccgagactggtatggtagcgatggctattcacggaaataagagccagaacgccaggcag
accgcgctgaagcgctttaaaagcggagatattaaaatccttgttgcaacggatattgcg
gcgaggggaattgatattcctgagctgtcccacgtgtttaactatgaattacccaatgaa
ccggaaacctatattcaccgcatcggcagaactggtcgtgccggtctgggaggcgttgcc
atcagcttctgcgactatgatgaaattccctatctaaaagatattgaaaagctgatgggg
caaaccatccctgaggaaaagtcggaatggccaatgacgattctgcaaaagtccgaaaag
gcgccacagaaacggtatggctttggtaatcctcatacgaccgcaacagctaagcccagg
agatcgcatgccccggcgtccgatcccttttcatatgcaagacctcacggtgtatccgca
agacagcatagccgcgcggcgggtagccgaaagagacgcgaaagatga
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