Oxalobacter vibrioformis: NB640_02755
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Entry
NB640_02755 CDS
T08675
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ovb
Oxalobacter vibrioformis
Pathway
ovb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NB640_02755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovb03019
]
NB640_02755
Enzymes [BR:
ovb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NB640_02755
Messenger RNA biogenesis [BR:
ovb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NB640_02755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Fe-ADH
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WAW10598
UniProt:
A0A9E9M142
LinkDB
All DBs
Position
complement(551360..552799)
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AA seq
479 aa
AA seq
DB search
MSDNQKMADKAVPVLRFEDFGLAEKILRALNDQGYTSPTPIQQQAIPVVLQGRDVMGAAQ
TGTGKTAGFSLPVIQVLLPTANTSMSPARHPVRALILTPTRELADQVADNVRNYAHYTGL
RSAVVFGGVDMAAQTTALRAGVEILIATPGRLLDHVQQKSVNLSQTSILIMDEADRMLDM
GFLPDLQRIINLLPQKRQNLMFSATFSPEIKKLAATILNNPVTIEVARSNATADNVSQAV
YQVDEADKSGAVAHIIQSQNLKQVLVFTNTRIGASRLTRLLEKKGIRSTAIHGDKTQPER
MAALEAFKQGEIDALVATDVAARGLDIAELPCVINYDLPFTAEDYVHRIGRTGRAGASGD
AISLYSAKDERSLADIEKLIKRKLPRTSLTGFDGKKSFSERSVQRQREGGHGMTSSGKRS
DRSPYKSVVLERKGKHDPWFDKPYEPSSSSSAEVKEDSKSVEKSPKKKVAALLGGLPKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatcaaaagatggccgacaaggctgtacccgttttgcgctttgaggatttt
ggcctggcggaaaaaattctgcgggcattgaacgatcagggatatacctcacccactccc
atccagcaacaggcgattcctgttgtcttgcaggggcgcgatgtgatgggggctgcccag
acgggtaccggtaaaacagccggtttttccctgccggttattcaggtacttttgcccact
gccaataccagcatgtctcctgcccgtcacccggttcgggcgcttatcctgaccccgacc
agggaacttgcagaccaggttgccgataatgtgcgtaattatgcgcactataccggcctg
cgttctgctgttgtatttggcggtgttgatatggcggcacaaacaacggcgcttcgggcc
ggtgtggagattctgatcgctacccctggacgccttctggatcatgtgcagcaaaaatcg
gtcaatctatcacagaccagcatcctgatcatggatgaggcagaccggatgctggatatg
ggttttttgccggatttgcaacgcattatcaatctgttgcctcaaaaacggcaaaacctg
atgttttccgcaacgttttcccctgaaatcaaaaaactggcagcgactatcctgaataac
ccggttacgattgaagtcgccagaagcaacgcgacagcagataacgtctcacaagccgtt
tatcaggtggatgaggctgacaagagcggtgcagtagcacatatcatccagagccagaat
ctgaaacaggtcctggtttttaccaacacacggattggcgcctcccgtctgacccgtctg
ctggaaaaaaagggcattcgctcaaccgcaattcatggcgataagacacagcctgaaagg
atggctgcgcttgaagccttcaaacaaggagaaatcgatgcgctagttgcaactgacgtg
gccgccagaggactcgatattgccgagttgccgtgtgtaatcaactacgatttgcccttt
acggcagaggattatgttcaccgtattggccgaaccggccgggcaggtgcctcaggagat
gccatttcgctttattctgccaaggatgagcgtagtcttgccgatatcgaaaagctgatc
aagcgtaaattgcctcgtacgtccctgaccggttttgacgggaaaaagtctttttcagaa
cggtcagtgcaacgccagcgggaaggtggtcacggtatgacttcatccggaaagcgttcc
gatcgcagcccttacaaatccgtggtgcttgaacgcaagggcaagcatgatccctggttt
gacaagccctatgagccttcttcatcgtcgagtgcagaagtaaaagaagacagcaagagt
gtagagaagtcgcctaaaaagaaagtagccgcgcttttaggcgggttgccaaagaaataa
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