Oxalobacter vibrioformis: NB640_08960
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Entry
NB640_08960 CDS
T08675
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ovb
Oxalobacter vibrioformis
Brite
KEGG Orthology (KO) [BR:
ovb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovb03019
]
NB640_08960 (hrpA)
Enzymes [BR:
ovb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NB640_08960 (hrpA)
Messenger RNA biogenesis [BR:
ovb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NB640_08960 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
WHD_HA2
AAA_19
T2SSE
nSTAND3
NACHT
nSTAND_NTPase5
AAA_30
SRP54
AAA_23
ABC_tran
SLFN-g3_helicase
AAA_24
Motif
Other DBs
NCBI-ProteinID:
WAW09378
UniProt:
A0A9E9LY64
LinkDB
All DBs
Position
complement(1802096..1806037)
Genome browser
AA seq
1313 aa
AA seq
DB search
MTATQISKKNRRFPAQTQADNLQTGFRNPVPPVIYPEELPVSLKRDEIAAALDANQVIIV
CGETGSGKTTQLPKICLELGRGTKGLIGHTQPRRIAASATARRIASELGTPLGENVGYKI
RFTDKLSRGASVKLMTDGILLAETQGDRLLKQYDTIIIDEAHERSLNIDFLLGYLKQLLP
KRPDLKLIITSATIDAERFARHFGSAGNPAPIIEVSGRLYPVEIRYRPVYDPAFSPSDES
GKNGQKTASRAETAREQRNLIEAIAEAVDEVVRIGSGDILIFLPGEREIRDTADVLRRRH
PPHVEILPLFARLSAQEQEKIFRLTNARRIVLATNVAETSLTVPGIRFVIDPGLARIKRY
SYRNKVEQLHIEPISQAAANQRAGRCGRVASGICIRLYEEQDFTLRPEYTTPEILRSSLA
SVILRMQALRLGDVETFPFLEPPLKRAIADGYQLLQELGALDELNQMTAVGQQLSRLPLD
PRIGRMILAARDQQSLTEVLIIAAALSTQDPRERPLDAQEAADNAHQKFVEPRSEFMSYL
KIWNWFNDAVKNKKSNKQLQETCRASFLSQLRLREWRDVHSQLLALVHEQGWRLNETPAT
YEQLHLALLTGLLGNIGCKADDGAYYLGARGIRFYLWPGSTLGKKAGRWVMAAELVETTR
LYARCLSQIQPEWLERVGRHLLKKSWGEPRWEKRPAQVSAYERATLYGLVVYSQRRTHYG
PVNPVESREIFIRDALAGGDFETRAPFFAHNQRLLREIENLEHKSRRADVLVDDELIAAF
YDKHLPKDVYNGISFEKWHKDIAANTPKLLYLNKDDLMRHEAAGITTDFFPKQLKLAGTD
MALSYHFEPGNVRDGVTLAVPLYALNQLSAERCEWLVPGMLKEKTHQLLKSLPQRLRRRC
VPLPDYASRFCDRINETDRFGKGPLLDALIADIREQTGLTPKTEDFRLETLLPHLFMNFR
VVDENGRMLEMARNIATLQAQFGGKARESFQQLAEDNPIRAIEPSKEKNGQGKTPSANAI
PPENLPIHHEKLTSWNFGELPELLEISRGKQSLIGYPALVDKETHCEIEVFDEPAIAEQT
HRAGLRRLFSLQLKDQMKFLAKNIPDLQKMGMQYLALGTQEELRDRILQAALDAAFMQAP
LPANETGFATRIGEGKARIGLLVNEIARLASQILTEYAQLQRKLQGIKAHENALTDMRSQ
LATLLGKNFLTENDPARLAHFPRYLKAASVRIDKLRTDPARDTRLMADWQAVASPWQRTW
RERQKSGGIIDPKMQDFRWMLEELRVSLFAQELRTPMPVSVKRLQKVWESMQR
NT seq
3942 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactcaaatcagtaaaaaaaatcgccgtttccctgcacagacgcaagccgat
aaccttcaaaccggttttcgcaatccggttcctcctgttatctacccggaagaactcccg
gtttctctcaagcgagacgagattgcggctgcgctggacgctaatcaggtcatcattgta
tgtggggaaaccggctcgggcaaaaccacgcaattgccaaagatctgcctggaactggga
cgcggtacaaaagggctgatcgggcatacccagccacggcgtattgcggcaagtgcaacc
gccaggcgaattgccagtgaactcggcacaccccttggtgaaaacgtcggctataaaatc
cgctttactgacaagctcagtcgcggtgcctccgtcaaactgatgacagacggtattttg
cttgcagaaacacaaggcgaccgtctactcaaacaatatgacaccatcatcatcgacgaa
gcgcatgaacgcagcctgaatattgattttttgctgggttacttaaagcagcttttgcca
aaacgcccggacctgaaactcattatcacctcggcaaccattgatgccgaacgctttgcc
aggcatttcggatcagcaggcaatccggcaccgatcattgaggtatcaggccgactttac
ccggtggaaatccgctaccggccagtatacgatcccgcattttcgccatccgatgaatcc
ggaaaaaacggacaaaaaacggccagccgggctgaaaccgccagagagcagcgtaacctg
attgaagccattgccgaagccgttgatgaagtggtccgtatcgggtcaggcgatatcctg
atttttcttccgggggaacgggaaatccgggatacagccgatgtcctcaggcggcgccac
ccgccccatgtggaaatcctgccgctttttgcgcgcctgtctgcccaggagcaggaaaaa
atcttccgcctgaccaatgcccgcagaatcgtgctggcaaccaatgtggcagaaacctct
ttgaccgtgccgggtatccgttttgtcatcgaccccggcctggcccgcatcaagcgctac
agttatcggaacaaggttgagcagcttcatatcgaacccatttcccaggccgccgcaaac
cagcgtgccgggcgatgcgggcgtgttgcctccggtatttgcattcgcctgtatgaggag
caggactttaccttgcgccctgaatacaccacaccggaaatcctgcgctcatcactggct
tccgttatcctgcgcatgcaagccttgagactcggggatgtcgaaacctttccctttctt
gagccacctttaaaacgcgccatcgcagatggttaccagctcctgcaggagctgggtgca
ttagatgagttaaaccaaatgacagcggtagggcagcaactgtccagactgccgcttgat
ccgcgaatcggccgtatgatcctggcggcaagagatcagcagagtctgacagaagtgctc
atcattgccgccgcactctccacccaggaccccagggaaaggccgctggacgcgcaggaa
gccgctgacaacgcgcatcagaaatttgttgaaccccgctcggaatttatgagctacctc
aaaatctggaactggttcaatgatgccgtcaaaaacaagaaatccaacaaacaactgcag
gaaacctgccgtgccagctttctgtcacaactacgtctgcgggaatggcgtgatgtgcat
tcccaattgctggcgctggtgcatgaacagggatggcgtctcaatgagacaccggccacc
tatgaacagcttcatctggccttgctgaccggtcttttgggcaatatcggctgcaaggcc
gatgacggggcttactatctgggcgcgcgcggcatccgtttttatctctggcctggctca
accctgggcaaaaaggccggaagatgggtgatggcggcagaactggtggaaaccacccgc
ctttacgcccgctgtctgtcacaaatccagccggaatggctggaacgggtaggccgtcac
ctgctgaaaaaatcctggggagaaccccgatgggaaaaacgccccgcccaggtatcggca
tatgaacgggcaacgctttatggcctggttgtctacagccagcggcgcacgcactatggt
ccagtcaacccggttgagtcacgtgaaatttttatccgcgatgcgctggcaggcggagac
tttgaaacacgcgcccccttctttgcccataaccagcgactgctccgggaaattgaaaat
ctggagcacaaatcgcgacgggcggatgtgctggtggatgatgagttaatcgctgctttt
tatgataaacatctgcccaaagatgtctataacggcatcagctttgaaaaatggcacaag
gatatcgcagccaacacaccgaaactgctgtatctgaacaaagacgatctcatgcggcat
gaggccgccggcatcacaacggattttttccccaaacaattaaagctggccggcacggac
atggcgctttcttatcatttcgagcctggcaatgtcagggatggggtgacacttgccgta
ccgctttatgcactcaaccagttatctgccgagcgttgcgaatggctcgtgcccggcatg
ctcaaagaaaaaacgcaccagttgctcaaatcccttccgcaacggctgcgccgtcgatgt
gttcccctgccggattatgcttcccgcttctgtgaccgcatcaacgaaaccgatcgtttc
gggaaaggcccccttctggatgcgctcattgccgacatacgggaacagacaggcctcacc
ccgaaaaccgaggatttccggctcgaaacactgctgccacatctcttcatgaattttcgt
gttgtggatgaaaacgggcgtatgctggaaatggcgcgcaatattgcgacactccaggcg
caatttggaggcaaagccagggaaagctttcagcaactggctgaagacaatcccattcgg
gcgattgaaccatcgaaagaaaaaaacggccagggaaaaactccttctgccaacgccatc
ccgccagaaaacctgccgatacaccatgaaaaactcacctcctggaattttggcgaattg
cccgaactcctggaaatctcccgagggaaacaatcgctgatcggctatccggcgctggtg
gacaaggaaacccattgtgaaatcgaggtatttgatgaaccggccattgccgaacaaacc
caccgtgcaggccttcgccgcctcttttcgctgcagttgaaagaccagatgaaattcctg
gcaaaaaacattccggacctgcagaaaatgggcatgcagtatcttgcattgggcacccag
gaagaattgcgcgaccgtatcctgcaggcggccctggatgccgctttcatgcaggcgccg
ctcccggcaaatgaaaccggatttgccacccggatcggggaaggcaaggcaagaataggc
ctccttgtcaacgaaatcgcccggttggcatcgcagattctcaccgaatacgcccagttg
caacgcaagctacaaggcatcaaggcacatgaaaatgccctgaccgacatgcgaagccaa
ctggcaaccctgctcggcaaaaacttcctgacagaaaatgatccggcacgactggcccac
ttcccgcgttacctgaaagccgccagtgtccgtattgacaagctccgtaccgatccggca
cgcgatacccgccttatggctgactggcaggccgtagcttccccctggcagcgcacatgg
cgtgaacggcagaaatcaggcggcatcatcgacccgaaaatgcaggatttcagatggatg
ctggaagagttgcgggtttcactttttgcgcaggaactgcgtacgcctatgcccgtttcc
gtcaaacggcttcagaaagtctgggaatcgatgcagcgttag
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