Oxalobacter vibrioformis: NB640_12675
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Entry
NB640_12675 CDS
T08675
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ovb
Oxalobacter vibrioformis
Pathway
ovb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NB640_12675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovb03019
]
NB640_12675
03009 Ribosome biogenesis [BR:
ovb03009
]
NB640_12675
Enzymes [BR:
ovb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NB640_12675
Messenger RNA biogenesis [BR:
ovb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NB640_12675
Ribosome biogenesis [BR:
ovb03009
]
Prokaryotic type
rRNA processing factors
NB640_12675
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
Motif
Other DBs
NCBI-ProteinID:
WAW10051
UniProt:
A0A9E9P4F9
LinkDB
All DBs
Position
complement(2558633..2561674)
Genome browser
AA seq
1013 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLLDIDIETAGKEQHKSNIYKAVITRIEPSLEACFVNY
GEDRHGFLPFKEVVRGLFKEGVDVRNASIKDALAEGQEIMVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRVEGEERQELRENIDKLDLPPGMSVIARTAGIGRSVEELQ
WDLNYLLQLWRAIDGAGSSAPGAFLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQAR
QFMSHVMPDMVNRVKRYRDDIPLFSRFQIEHQIETAYSRVVPLPSGGSIVIDHTEALVSI
DVNSARSTRGGDIETTAFNTNCEAAEEAARQLRLRDLGGLIVIDFIDMEVSKNKREIENR
LKDALRHDRARVQMDKISRFGLIELSRQRLRPALSEGSHITCPRCNGTGHIRDVDSFSLQ
VLRIIEEESMKESSAAIHIQLPVGVAAFLLNEKRGEVIKIEARHRVAITVIPNKYLETPR
YKLERLKHDDPRLDDNHLSFELAEESTDVDMSFNKTQKEAPKPRQEALVKTISPDAPPPA
PPPAPAAAAPVAAPASGGVWDKILAFFGIEKAEEEVAPPPKPSGDTRAKRNNGDRDRNRN
RNRNRRGRDRNREDQAPETAIENTMDVVNDEMTMPKAPKQPRQPKEGGTGERKRNRRSGG
AKGEQKEKAAATEEMELLDANNEVVKEPRDTGIIDASGPADAKTADTASGEDEPRRRRRR
GGRNRNRRDRDSIADSAEVAEIVSGEAREIDELVDGLMADTLSQNDLAGRDVSEVATRDA
RVEDVAFRPVETVEAVVKEIPAENPRVTPVAFYDPNDEAVVDLDALPADNPAGVPLPVAE
EVPVVAAEARTADASPETVALEVSDFLTAPVLDAEVTEETPVGEVVIEETIRVEEAVIDE
TPAEPEVIVVDEPVVEPETVVLAEPMEEAGVEVKPLTEAERHPMVEAEVTEDFSDVLASA
GLTMAATDPEKLRQAQERAAQVAVEEEAPRPARRRRMPPPVADEPLVQVDTKK
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgtttaacgcaacacagcaggaagaactgcgtgtggcgattgtcgac
gggcaaaagctcctcgatattgatattgaaacagcaggaaaagaacagcacaaatccaat
atctataaagccgtcattacacgcatcgagccatcgcttgaagcgtgttttgtcaattac
ggtgaagaccggcatggttttctgcctttcaaggaagtggtcagaggccttttcaaggaa
ggcgttgatgtccgtaacgcttccatcaaggatgcccttgccgaaggccaggagatcatg
gtccaggtggaaaaggaagagcgcggcaataagggcgctgcactgaccacctttgtctca
ctggctggccgctaccttgtcctgatgccgaacaatccgcgtggcggtggtgtctcccgc
cgggttgaaggcgaagaacgccaggaactgcgtgaaaacattgataagcttgacctgccg
ccgggcatgtctgtcattgcccgcactgccggtatcggcagaagcgtggaagagctgcaa
tgggacctgaattacctgctccagctctggcgtgccattgatggcgccggcagctcggcg
ccgggcgcttttctgatctaccacgaatcttcgctggtgatccgcgcgatccgcgactac
ttccagccggatattggcgagatcctgattgatacggacgagatttatgagcaggcccgc
cagttcatgagccacgtcatgccggatatggtaaaccgggtcaagcgctatcgtgacgat
attccgctcttttcgcgtttccagatcgagcaccagattgaaaccgcctattcccgcgtg
gttccgctgccatccggtggctctattgtgatcgaccataccgaggcactggtatcgatt
gacgtcaactccgcgcgctcaacccgtggcggcgacatcgagacaacggcattcaacacc
aactgtgaagccgcagaagaagccgcccgccagcttcgcctgcgtgacctgggcggcctg
atcgtgattgacttcatcgacatggaagtctcgaaaaacaagcgtgagatcgaaaaccgc
ctgaaagatgccctgcgccatgaccgtgcacgggtgcagatggacaagatttcccgcttt
ggcctgattgagctttcacgccagcgcctgcgccctgcgctttcagaaggcagccatatc
acctgcccgcgatgcaatggcaccggccatatccgtgatgtggattctttttctctgcag
gtgctgcgcatcattgaagaagaatccatgaaggaaagttcggcagccattcatatccag
ttgccggtgggtgttgccgctttccttttgaatgaaaaacgcggcgaagtcatcaagatt
gaggcgcgccaccgtgttgcgataacggtcatcccgaacaaatacctggaaacgccccgc
tacaagctggaacgcttaaaacatgacgatccgcgtcttgatgacaatcacctgagcttt
gaactggctgaagagtcaactgatgtggacatgagcttcaacaagacacagaaagaagcg
cccaagccgcgtcaggaagccctggtgaaaaccatttcaccggatgcgccgccaccggcc
ccgccgccggcaccagccgctgccgcgcctgtagccgcaccggcttcaggtggtgtctgg
gacaagatactggccttttttggtattgaaaaagccgaggaagaagtggctccgccaccg
aaaccttccggtgatacccgcgccaaacgcaataatggcgaccgtgaccgcaaccgtaac
cgcaaccgtaatcgccggggacgtgaccgcaatcgcgaagatcaggcgccagaaacagcc
atagaaaacaccatggacgtggtcaatgacgaaatgaccatgccaaaggcgccaaagcaa
ccccggcagccgaaagaaggcggcacaggggaaagaaagcgcaaccgccgttcaggtggc
gccaagggtgagcagaaggaaaaagccgctgctacagaagaaatggaactgctggatgcc
aacaacgaagtcgtgaaagagcctcgtgataccggaatcattgacgcatcgggaccggct
gacgcgaaaacggctgataccgcttcgggtgaggacgagccgcgccgccgccgtcgccgt
ggcggacgcaaccgcaaccgccgtgatcgtgacagtattgcggacagtgcggaagtcgcg
gaaatcgtatcaggcgaagcccgtgaaatcgatgaactggttgatggcctcatggcggat
accctcagccagaatgatctggcaggaagggatgtctccgaagtggcaactcgcgatgcc
agggtcgaagatgtggctttcaggccggttgaaaccgttgaggcagttgtcaaggaaata
cccgccgagaatccgcgtgtgacgccagtggctttttatgatccgaatgatgaggctgtc
gtggatctggacgcccttcctgcggacaatccggcaggggtgccgcttcctgtcgctgaa
gaagtgccagtggttgctgcagaagccaggacagccgatgcatcgcccgaaaccgtggca
ctggaggtttcagacttcctcacggcccctgtcttggatgcggaggtaacagaagagact
cctgtcggggaagtggtgattgaggaaacgatccgggtagaagaagcggtcattgatgaa
acaccggccgagccggaagtcatcgtggtggatgagccggttgtcgagcctgagacggtt
gtccttgccgagccgatggaagaagccggcgttgaggtcaaaccccttactgaagcggaa
cgccatccgatggttgaggcggaagtgactgaggatttcagtgatgtgctggcttctgcc
gggctgaccatggctgcaactgacccggaaaaactgcgccaggcacaggaaagggcagca
caggtggccgtggaggaggaagccccccgccctgcccgccgccgcaggatgccgccaccg
gttgcagatgagccgctggtacaggtggatacgaaaaaataa
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