Opisthorchis viverrini (Southeast Asian liver fluke): T265_01921
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Entry
T265_01921 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T265_01921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_01921
03012 Translation factors [BR:
ovi03012
]
T265_01921
Enzymes [BR:
ovi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
T265_01921
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
T265_01921
Translation factors [BR:
ovi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
T265_01921
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
AAA_22
OB_NTP_bind
nSTAND3
AAA_19
NB-ARC
HA2_N
PhoH
ResIII
ABC_tran
AAA_16
ALF
AAA_23
Motif
Other DBs
NCBI-GeneID:
20316109
NCBI-ProteinID:
XP_009164311
UniProt:
A0A075A160
LinkDB
All DBs
Position
Unknown
AA seq
1092 aa
AA seq
DB search
MSRSVLHVLRTFPIRVGLHNMPKKSELDFHNALYEVLDRSDDRLLPASFMPDKNSGRPPP
WLRGKEIGLWYAAHSSNKPRKNVDKAATLDMTGINVTRLRNVLNLTHNTNSEPVPAELVT
TPDDMDPFDLSERSDPSKTGKVAASPSNDSLQSLDRRINGVSMESDPMQIRNLSLTRNRE
LDSTLASDLCRKQSSEAYRQMLEVRQKLPAYVRRKEIIDAVRSNQVVVISGETGCGKTTQ
IPQLILEDEITRGNGSVTRIVVTQPRRISAISVAERVAAERGEALGSSIGYQVRLDRCYP
RQLSGSIMYLTTGMLLQWLHSDPTFQNISHIIVDEVHEREFLCDFLLNVLRDITESRPDL
RVVVMSATLNADQFSSYFGNCMKLEIPGRLFPVQTFFLEDVLRMTNFYLPKEDLKELAKV
QHAYMKRCFLGGDLTKTAARKALDSNNEDLERWLSTQTDLSANAAEILRVVDDDAYPLTD
LIVHLIDHLLRTTTKGAILVFVPGIGAIRETIMKLRDMNPRLYDERSNRVCIYALHSQMT
LSKQRGLFEVPPGGKRKVIVSTNIAETSVTIEDVVYVIDSGRIKITNYDPLSNTNSLSPV
LVSRANAAQRRGRAGRVQMGYCYHLFSRYVQDNIMAEYQLPEMLRMRLEDVILRIKLLDL
GPVSTFLASCPNPPDPKAVERTLHFLREIQAIDMTEDSAVQLESSVSKHFTKGKKRWRRD
LRARAQAAMKQYNESGKDMLEEEEAEDETPSADISYGELPGDNSKLTPLGEHLARLPMDP
QSAKLLILGALFGCLEPALAVAACLNYRDPFEIPLEQQVAATRSRVELSQNSLSDHWVYK
TIIENYRQLQSGYDRRKFCDRYFIRENIVKDILRLMDDHATLLYERKYIGTPNPLDKDAN
RNKDNFPLFRAILCGALFPNILKLMPTIRAGRVKRPKVIARPSEGKISVSPKSVNGNVWA
SDPVWMVYFTKTRTEKSLNPTVLDTTIIPLRPVLFFSGIIQPTMSSDSTFTVDNWIQVKT
SPTVFQLITDLRKRMDEILESKFKNPDVTDWSTSSSEGRVLKTIIDLLVSEPVPIVQTQR
YPWEHKMDANRT
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggagcgtgctccatgttctacgaacctttcccattagagttggactacataac
atgccaaagaaaagtgagctcgactttcacaatgcattatatgaagttttagacagatcc
gatgaccgcttgttgcctgccagtttcatgcccgataaaaactcaggtcgcccacctccg
tggcttcgaggtaaggaaatcgggctgtggtacgctgctcattcttcaaacaaaccaagg
aaaaatgttgacaaggctgctacattagacatgacagggatcaacgtgactaggctacga
aacgttctcaatctcactcataacaccaattcagaaccagtaccggcagaactagttacc
actcctgatgacatggacccctttgatctgagtgagcgcagtgacccaagcaaaactgga
aaagttgcagcgagcccgagcaacgattcacttcagtctttggatcgacggatcaatggc
gtctcaatggaatcggatcccatgcagataagaaatctttctctcactcgtaaccgggag
ttagattccactttagcgtcggatctatgtaggaagcagtcttcagaagcctatcgtcag
atgttggaagttcgtcagaaactccctgcatacgttaggcgaaaggaaatcatcgatgct
gttcggtcaaatcaagtcgtcgtcatcagtggtgagactggttgtggcaaaacaacccaa
atccctcagttgattctcgaagatgagatcactcgtggaaacggttcagtcactcgcatt
gttgttactcaaccacgccgaatcagtgccatctccgtggccgaacgcgtggcagctgaa
cgtggagaggctctaggctcatctataggttatcaggttcgtttggatcgatgctatccc
cgtcagctttccggatctataatgtacctaaccacgggcatgcttctccagtggttgcac
tccgatccgacattccaaaatatcagccatataattgtggatgaagtgcacgaacgcgag
ttcctctgtgacttcctcctgaatgtcctacgtgatatcacggaatcacgccccgacctt
cgcgttgtcgtaatgtccgcaactctgaatgctgaccagttttcctcctacttcggtaat
tgtatgaaactggaaatacccggtcgtctctttcccgtacaaacgttctttctcgaggat
gttctgcggatgactaatttctatcttccgaaagaagatttgaaagaactcgctaaagtc
caacacgcctatatgaaacgatgttttctcggcggtgatttgactaagactgctgctcgt
aaggccctcgactcaaataacgaagacttagagcgatggctttccacgcagacggattta
tcagcaaatgcagcggagatacttcgtgttgtggacgatgacgcttacccattgaccgat
ctgatcgttcacttgatcgaccacctcttgcgaaccaccactaagggtgccattctggtt
tttgtccctggaattggggcgattcgggagaccatcatgaagctgcgtgatatgaatcct
cgactgtatgacgagcgaagcaaccgagtgtgtatctatgctctacattcgcaaatgact
ctatccaaacaacgcggactttttgaagttccacctggagggaaacgaaaagtgatcgtc
tccacgaacattgctgaaaccagtgtgaccattgaagacgtggtttatgtgattgacagt
ggtcgaataaagattaccaactacgatccactctccaacaccaattccttgtctccagtt
ctcgtcagccgagcaaatgctgctcagcgacgtggaagagctggtcgtgtgcagatggga
tattgctaccacctattctccagatacgtccaagataacattatggcggagtatcaactc
ccggaaatgctccgaatgcgactggaagacgtcattctcaggattaagctcttggatctt
ggccctgtaagcacattcctagcatcctgtcccaatcctcctgacccgaaggctgtggaa
cgtacgcttcattttcttcgtgaaatccaagcgatcgacatgactgaggattcggccgtt
cagctcgaatcatctgtgtcaaaacactttaccaaaggaaagaaacggtggcgtcgagac
ctgagggctcgtgcccaggctgctatgaagcaatacaatgagagcggcaaagatatgctg
gaagaagaagaagcggaagatgaaactccatcggccgatatctcttacggagaactaccc
ggtgacaactcaaaactcactcctttgggtgagcacctcgccaggcttcccatggacccc
cagtcggcaaaactgcttattctgggtgcgctgttcggatgtttagaaccggcacttgcg
gttgctgcttgtctaaattatagagatccattcgaaatcccactggagcaacaagtcgct
gctactcgtagccgtgtggagctatcccagaattcactcagtgaccattgggtttacaag
acaatcatcgagaattaccgtcagcttcaatctggctacgatcgacgaaaattctgtgat
cgatacttcattcgtgaaaacattgtcaaagatattcttcgcctaatggatgatcacgcg
acgcttttgtatgaacgcaagtacattggcacaccgaatccgttggacaaagatgctaac
cgaaacaaagataacttccctctgtttcgggccatcctatgcggtgcactctttcccaac
attctcaaactgatgccgacgattcgggccgggcgtgtcaaacggccaaaggttatagcc
agaccatccgaaggaaaaatcagcgtcagtccgaagtcggtgaatggaaatgtttgggca
tcggatccagtctggatggtgtactttacaaaaactcggaccgaaaaatcgcttaaccca
acagttttggatacaacaatcatccctttgcgaccggttctatttttttcgggaatcatt
cagccaaccatgtcgtcggactccacgttcactgtcgacaactggatacaagtgaagacc
agtcccactgtttttcaacttatcacagacctacgcaagcggatggatgaaatcctggaa
agcaagttcaagaatccggatgtaactgactggagtacatcctcatccgaaggccgtgtg
ctcaaaactataattgacttgctcgttagcgaacccgtgccaatcgttcaaactcagcgg
tatccatgggaacataaaatggatgccaacaggacgtga
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integrated database retrieval system
