Opisthorchis viverrini (Southeast Asian liver fluke): T265_02634
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Entry
T265_02634 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T265_02634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_02634
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
T265_02634
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
T265_02634
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP4
KH_6
RRP40_S1
ECR1_N
YphG_2nd
Motif
Other DBs
NCBI-GeneID:
20316822
NCBI-ProteinID:
XP_009165196
UniProt:
A0A1S8XB72
A0A074ZYK4
LinkDB
All DBs
Position
Unknown
AA seq
389 aa
AA seq
DB search
MPICMYPAIAAPERNTPNYALQGCRTSNDSIHQGSAVVPGEVVFPMGSNLITGHGTYRDF
DESVASAQLREAVDRQGPSTHEDSIKTGAMRTSLTGRVRIVNKLVYVEPPKARYSGNVGD
TVVGRIIEVEQRRWKVDINSSLLGNLALANVKLPGGELRRKSEDDERAMRSFMKEGDLIV
AEVHEIYKDGTLQLHMPGTRTGKLGGGCLLRIPPSLVKRQKIHRHRLAVPRTSSVHGPLT
SASTNLTEVISVGLILGCNGYVWIGPARAMDIGLGLAAPIESTAEGSTQLDYLAERFAVS
RVRNCVIALTQNGMPVWETSVLAACEASWLADLHSADEEDMEEDMEIDVVDPSVSLPTSR
VRNRIARLLRPDVAQRLVSLVQAKLGTTT
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgcccatttgtatgtaccctgccattgctgccccagagagaaacactccaaattatgct
ctacaaggttgccgaacatctaatgattcgatacaccaggggtcagccgttgtcccaggc
gaggtggtttttcctatgggctcaaatctaatcactggtcacggaacatatcgagacttt
gatgaatctgtggcgtcagcacaactccgtgaggcggttgaccgccagggaccaagtacg
cacgaagatagcataaagacaggagcaatgcgcacttctctgacggggcgtgtacgaata
gtcaataagctggtctacgtagaaccacctaaagcgcggtattctggaaatgtgggagat
actgtcgttggtcgtattatagaggtggaacaacgtcgctggaaggtcgatattaactct
tctcttcttggaaacctggcgcttgcgaatgtgaagctgcctggcggcgagcttcgtcga
aaatcagaggatgatgagcgcgcaatgaggtccttcatgaaagagggtgacctcatcgtt
gctgaggtacacgagatctacaaggacggaactctacaattgcacatgcccggcacgagg
accggcaaacttggcggcggttgtcttcttcgcatcccaccgagtttggttaaacggcag
aagattcatcgacatcgtctggctgtacctcgaacgtcgtctgttcatggcccattaaca
tcggcttccactaatctcacggaggtgatttcagttggtctcattctaggatgcaatggt
tacgtatggattggaccagctcgcgccatggatatcggtcttggcctagccgcgcctatt
gagtccacggccgagggcagcactcagttagactacttggctgaacggtttgcggtctct
cgcgtgcgcaattgcgtcattgcattgacgcaaaacggcatgccggtttgggaaacgagc
gttttggcagcttgtgaagccagctggttggccgatctgcactcggctgatgaagaagat
atggaagaagatatggagattgatgtggtcgatccgagtgtttcacttccaaccagccga
gttcggaatcgaatcgcccgtctactgcggccggacgtggctcagagacttgtttccctt
gtacaagcaaagttggggactacaacttga
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