KEGG   Opisthorchis viverrini (Southeast Asian liver fluke): T265_02688
Entry
T265_02688        CDS       T04902                                 
Name
(RefSeq) hypothetical protein
  KO
K14406  cleavage stimulation factor subunit 1
Organism
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ovi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    T265_02688
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ovi03019]
    T265_02688
Messenger RNA biogenesis [BR:ovi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     T265_02688
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd Beta-prop_EML_2 CSTF1_dimer Beta-prop_WDR36-Utp21_2nd WD40_Gbeta ANAPC4_WD40 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C NBCH_WD40 eIF2A WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_NWD2_C Beta-prop_ACSF4 Beta-prop_WDR35_TULP_N Tricorn_2nd Beta-prop_RSE1_2nd Frtz Cytochrom_D1 B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 20316876
NCBI-ProteinID: XP_009165254
UniProt: A0A074ZV37
LinkDB
Position
Unknown
AA seq 441 aa
MSFKERDLLYRLIIRFELYQLTIHALSQLFYDGFQTMAVNLVNLVSPSTACGPSNRLFRL
VKLGLASSEEEQEKGGVIEGECIAPGTGIDLEVESESSTMAPEAALYETCYVTAHKAACR
AAAFNGTGQLVATGSHDSSIKILDVERMLAKSVSPADHLGQETPQQQMETHPVIRTLYDH
TAEVTCVDFHPDPTLQILVSGSKDYTIKLFDFSNPSVKKAQRNIPEASPIRTLHFHPSGN
FLLVGTQHKTLRLYDVQTCRCYVSAVPEDQHQSSVNMVRWSPNGNAFVTAGMDGNFKIWD
GVSCRCVNTFEAAHDGAPVCSAMFSRNGKYILSSGKDSAVKLWEIATGRCLITYTGAGTT
GHQTHRSMAVFNHTEDYVLFPDEATKSLCCWDSRNADRQRLLALNHNGPIRCFVHSPTTA
AFMSCSDDNRARFWYKRPISD
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgtcatttaaagaacgcgatttgctctatcggttgattataaggtttgaattgtaccaa
ctaaccattcatgccctcagtcaactgttttatgatggattccaaacgatggcagtaaat
ttggtgaacctagtgagcccctccacggcttgtgggccctcaaaccggttgttccgcctt
gtaaagttgggattggcctcatctgaagaggaacaagagaaaggcggggttattgaagga
gagtgtatcgcccctggaactggtatcgaccttgaggtagaaagtgaaagctctacaatg
gctcctgaagctgctctctatgagacatgctacgttacagcccacaaagccgcctgtcgc
gctgccgcttttaacggaacagggcagttggtagcaaccggttcccacgactcatcgatc
aagattctagacgtggaacggatgttggcgaagagtgtatctccagccgatcacctggga
caagaaacgcctcagcaacaaatggaaacccatccagtgattcgaaccttatatgaccat
accgcggaggttacttgcgtggatttccatcctgatcctacacttcaaatacttgtcagt
gggagcaaggactatacaatcaagctgttcgatttctccaatccttctgtaaagaaagct
caaagaaatataccggaagcctcaccgattcggactcttcatttccatccatcgggcaac
tttttgctggtgggtactcagcacaaaaccctacggttgtatgatgtccaaacctgtcgc
tgctatgtgtctgctgtcccagaagatcaacaccaaagctctgtcaacatggttcggtgg
tcacccaatgggaacgcgtttgttactgcgggaatggatgggaactttaagatttgggac
ggagtctcttgtcgatgcgtgaacactttcgaggctgcacacgacggtgcgcctgtatgc
tctgcaatgttctctcgcaacggaaagtatatactcagttcgggcaaagacagtgctgtg
aagctctgggaaatagctacaggtcggtgtctcatcacatacaccggtgccgggactact
gggcaccagacgcatcgatccatggcagtgttcaatcacacagaggattacgttctgttt
ccggatgaagctacgaaaagtctttgttgctgggactcacgaaacgccgaccgacagcgc
ctacttgctttaaatcacaacggcccaatacgctgctttgtacattctccgactacagct
gcgttcatgtcctgcagtgacgacaacagagcacggttttggtacaaacgacccatttcg
gactaa

DBGET integrated database retrieval system