Opisthorchis viverrini (Southeast Asian liver fluke): T265_03970
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Entry
T265_03970 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T265_03970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_03970
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
T265_03970
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
20318156
NCBI-ProteinID:
XP_009166841
UniProt:
A0A074ZQJ4
LinkDB
All DBs
Position
Unknown
AA seq
946 aa
AA seq
DB search
MSVPVDREVWWTQSRRNKKRPRKPLIRATGPRKPPVSETIKDQNGTAISTKELLDGLGEV
EPWTVDVETPTASEVYDCVCSLKRPRAEQIAAFQIFFSIQFCRPSDCSVAMTSVDSKSQS
AVEGQPGPQLLPMIAKAVKLSQELPTVNTPAYIYYNDFPQYKAIAAGQSKKILSIVQNVL
DLLDARTNVLDIPNSKSSREKFSSIVDANDRLLERLSMAMDMEEDPGRRATAQRVSENLV
VAVHKNQSTSIGWLKAGTKILGSDQTEQQESTAGDGLLKLLTSTTIRRPQTLFSVPPDNS
PAPFRPNLPHKPNQIRSLSDSLPSELEGDTEYPHPYEAELDAFAHTISHWKPLNPEAHPL
EPIDANYKFVDTLSALDAALSEISMHKEVAVDLEHHSHRSYLGITCLVQLSTRTTDYILD
ALALRDHLHKLNVIFTDPDVVKVFHGSDMDLMWLQRDFSVYVINLFDTGLAARALQLGRF
SLSFLLLRYANFRANKKYQLADWRIRPLPDELIEYARTDTHYLLHVSAVMCQELQDRGLL
EVVLEGGRQLCLKRYTKPAFDPLGYLSLYRQAAGTSFNHRQLYALEQLYALRDSIARRED
ESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLVRKYVHDLHKIIVDARNKPISELT
VTPLPDTNVPITTPDHVDPQPSAPGSMVYSTFVPAPPHDQSHGFQPSSKVAVTTAKDLET
GPSPLGRIFGDENTQHMDDTSEITCQKWWASRLMDPNRLLLNELSRLLSIGLTEGSKTFS
SEMTYTKDTIVQPAASAPRQTPAEPIIKLELDDKPNETNRPIVPSKQKGFLAGKPQVLTD
PDSSTTAAAPNFNSDEVVILRQEMPSRNKRSGRQRKRKQPADHSFVQDVSGANEISDSGT
ASENFTETHVAMRGMASQRSKMSRKPRNTAQTRRTRGNIHHQGRKS
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgccagtcgaccgtgaagtttggtggacacaaagccgaagaaataaaaaaagg
cccagaaagccgttgatccgtgcgacgggtccccggaaaccacctgtgagcgaaaccata
aaggatcagaatggaacggccatctcgactaaggaactcctcgacgggttgggtgaagta
gaaccctggacggtggacgtggaaacgcctacagcctcggaggtttacgactgcgtatgt
tctctcaagcgcccccgagccgaacagattgctgctttccagattttcttttcgatccag
ttctgtcgtccttcagactgttctgtcgccatgacttctgttgacagcaaatctcaatcc
gccgtcgaaggacaacctggaccacaattactacccatgattgcaaaggccgttaaatta
tcacaagagctaccaacagtcaacacacctgcatatatttactacaacgacttccctcag
tacaaggcgatagcggctggtcagtcgaagaaaatcctctcgattgtccaaaatgtactc
gaccttttagatgcaagaaccaatgtacttgatattccaaactcgaaaagctcgcgcgaa
aagttctcttcaattgttgatgcaaatgataggttgcttgagcgtttgtcaatggcaatg
gatatggaagaagatcctggtcgaagagcaactgcacagagagtctcagagaatttggtt
gtcgctgtccacaagaatcagagtacttcaattgggtggctgaaggcagggacaaaaatt
ttgggatccgaccaaacggagcaacaagaaagtacagctggggacggattgttaaagctg
ctcacttccacgacaattcgccgacctcaaaccctgttttctgtccctccggacaattct
cccgctccgttccggccaaatttaccccataaacctaatcaaatccggtcattgtcggat
tcattgccaagtgaactcgaaggcgacacggagtatccgcacccatacgaggcagaattg
gacgcgtttgcgcataccatctcgcactggaagccactaaatccagaggcgcatcctttg
gagcctatagacgccaattacaagttcgttgatacgctgtcggcactggatgccgcgttg
tccgaaatttccatgcacaaagaggttgctgttgatcttgagcaccatagtcatcgaagc
taccttggcataacgtgtctcgttcagctgagcacgcggactacagactatatactggac
gcattagctctacgtgaccatttgcacaaactgaatgtgatcttcactgaccctgatgtg
gttaaggtctttcatggatcagatatggatctcatgtggcttcagagggatttcagcgtc
tatgttatcaacttgtttgacaccgggctggcggcccgagcactacagctgggacgcttt
tctcttagctttcttctgctgcggtatgccaattttcgcgcaaataagaaatatcaactg
gccgactggcgaatcagacctctgcctgacgagttaattgaatatgcacgcacagacacc
cattacttgcttcatgtgtctgctgtcatgtgccaggagctgcaagatcgcggccttttg
gaagtcgttttggaaggagggagacagttatgcctgaagcggtacaccaaacctgcattt
gatccgctgggctatctgtcactatacagacaagcagctggaacaagcttcaatcaccgc
cagttatatgcgttagaacagctatatgcgctacgtgattctattgccagacgtgaagat
gaaagtgtgcactacgttctaccgaatcacatgctcaaaacaatcgctgaggtactgcct
cgtgaaagttctggtttatttgcatgttgcaatcccattcctccactggttcgtaaatat
gtccacgatcttcacaagatcatcgtcgatgcccgaaataaacccattagcgagttgacc
gtcactccactcccggataccaatgtcccgataactacgccagatcatgtcgatccacag
ccatctgcacccggttctatggtatactctaccttcgtaccggcccctcctcatgaccaa
tctcatggtttccaaccttccagtaaagtcgcagtgacaactgccaaagatctggaaacc
ggtccatcacctcttggtcggatcttcggtgatgagaatacacagcatatggacgacaca
tccgagataacatgccagaaatggtgggcatcgcgtttgatggatcctaaccgccttctt
ctgaatgagctttcacggcttctatcgatcgggttgactgaaggcagcaagaccttttca
agtgaaatgacatacaccaaggacactattgtacagccagctgcatcagcaccgcgacaa
acgccagctgagccgatcatcaagttagaattggacgataaacccaacgaaactaatcgc
ccaatcgttccttcgaaacaaaaaggcttcttggctggcaagcctcaagtgcttacagac
ccagactcgtccacaactgcagctgcaccgaatttcaactcagatgaggttgtaatactt
cgacaagaaatgccttcgcgtaataaacgcagtggtcgccaacgaaaaagaaaacaacct
gctgatcactctttcgttcaagacgtttcaggtgcaaatgaaatctctgattccggaacc
gcatcagaaaatttcacagagacacacgtagcaatgagaggaatggcctcccagaggtcc
aagatgagtcgaaagccgcgcaacaccgcacagacccgaagaacacgtggcaacattcac
catcaaggacgaaagtcttaa
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