KEGG   Opisthorchis viverrini (Southeast Asian liver fluke): T265_03970
Entry
T265_03970        CDS       T04902                                 
Name
(RefSeq) hypothetical protein
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ovi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T265_03970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ovi03019]
    T265_03970
Messenger RNA biogenesis [BR:ovi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     T265_03970
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 20318156
NCBI-ProteinID: XP_009166841
UniProt: A0A074ZQJ4
LinkDB
Position
Unknown
AA seq 946 aa
MSVPVDREVWWTQSRRNKKRPRKPLIRATGPRKPPVSETIKDQNGTAISTKELLDGLGEV
EPWTVDVETPTASEVYDCVCSLKRPRAEQIAAFQIFFSIQFCRPSDCSVAMTSVDSKSQS
AVEGQPGPQLLPMIAKAVKLSQELPTVNTPAYIYYNDFPQYKAIAAGQSKKILSIVQNVL
DLLDARTNVLDIPNSKSSREKFSSIVDANDRLLERLSMAMDMEEDPGRRATAQRVSENLV
VAVHKNQSTSIGWLKAGTKILGSDQTEQQESTAGDGLLKLLTSTTIRRPQTLFSVPPDNS
PAPFRPNLPHKPNQIRSLSDSLPSELEGDTEYPHPYEAELDAFAHTISHWKPLNPEAHPL
EPIDANYKFVDTLSALDAALSEISMHKEVAVDLEHHSHRSYLGITCLVQLSTRTTDYILD
ALALRDHLHKLNVIFTDPDVVKVFHGSDMDLMWLQRDFSVYVINLFDTGLAARALQLGRF
SLSFLLLRYANFRANKKYQLADWRIRPLPDELIEYARTDTHYLLHVSAVMCQELQDRGLL
EVVLEGGRQLCLKRYTKPAFDPLGYLSLYRQAAGTSFNHRQLYALEQLYALRDSIARRED
ESVHYVLPNHMLKTIAEVLPRESSGLFACCNPIPPLVRKYVHDLHKIIVDARNKPISELT
VTPLPDTNVPITTPDHVDPQPSAPGSMVYSTFVPAPPHDQSHGFQPSSKVAVTTAKDLET
GPSPLGRIFGDENTQHMDDTSEITCQKWWASRLMDPNRLLLNELSRLLSIGLTEGSKTFS
SEMTYTKDTIVQPAASAPRQTPAEPIIKLELDDKPNETNRPIVPSKQKGFLAGKPQVLTD
PDSSTTAAAPNFNSDEVVILRQEMPSRNKRSGRQRKRKQPADHSFVQDVSGANEISDSGT
ASENFTETHVAMRGMASQRSKMSRKPRNTAQTRRTRGNIHHQGRKS
NT seq 2841 nt   +upstreamnt  +downstreamnt
atgagcgtgccagtcgaccgtgaagtttggtggacacaaagccgaagaaataaaaaaagg
cccagaaagccgttgatccgtgcgacgggtccccggaaaccacctgtgagcgaaaccata
aaggatcagaatggaacggccatctcgactaaggaactcctcgacgggttgggtgaagta
gaaccctggacggtggacgtggaaacgcctacagcctcggaggtttacgactgcgtatgt
tctctcaagcgcccccgagccgaacagattgctgctttccagattttcttttcgatccag
ttctgtcgtccttcagactgttctgtcgccatgacttctgttgacagcaaatctcaatcc
gccgtcgaaggacaacctggaccacaattactacccatgattgcaaaggccgttaaatta
tcacaagagctaccaacagtcaacacacctgcatatatttactacaacgacttccctcag
tacaaggcgatagcggctggtcagtcgaagaaaatcctctcgattgtccaaaatgtactc
gaccttttagatgcaagaaccaatgtacttgatattccaaactcgaaaagctcgcgcgaa
aagttctcttcaattgttgatgcaaatgataggttgcttgagcgtttgtcaatggcaatg
gatatggaagaagatcctggtcgaagagcaactgcacagagagtctcagagaatttggtt
gtcgctgtccacaagaatcagagtacttcaattgggtggctgaaggcagggacaaaaatt
ttgggatccgaccaaacggagcaacaagaaagtacagctggggacggattgttaaagctg
ctcacttccacgacaattcgccgacctcaaaccctgttttctgtccctccggacaattct
cccgctccgttccggccaaatttaccccataaacctaatcaaatccggtcattgtcggat
tcattgccaagtgaactcgaaggcgacacggagtatccgcacccatacgaggcagaattg
gacgcgtttgcgcataccatctcgcactggaagccactaaatccagaggcgcatcctttg
gagcctatagacgccaattacaagttcgttgatacgctgtcggcactggatgccgcgttg
tccgaaatttccatgcacaaagaggttgctgttgatcttgagcaccatagtcatcgaagc
taccttggcataacgtgtctcgttcagctgagcacgcggactacagactatatactggac
gcattagctctacgtgaccatttgcacaaactgaatgtgatcttcactgaccctgatgtg
gttaaggtctttcatggatcagatatggatctcatgtggcttcagagggatttcagcgtc
tatgttatcaacttgtttgacaccgggctggcggcccgagcactacagctgggacgcttt
tctcttagctttcttctgctgcggtatgccaattttcgcgcaaataagaaatatcaactg
gccgactggcgaatcagacctctgcctgacgagttaattgaatatgcacgcacagacacc
cattacttgcttcatgtgtctgctgtcatgtgccaggagctgcaagatcgcggccttttg
gaagtcgttttggaaggagggagacagttatgcctgaagcggtacaccaaacctgcattt
gatccgctgggctatctgtcactatacagacaagcagctggaacaagcttcaatcaccgc
cagttatatgcgttagaacagctatatgcgctacgtgattctattgccagacgtgaagat
gaaagtgtgcactacgttctaccgaatcacatgctcaaaacaatcgctgaggtactgcct
cgtgaaagttctggtttatttgcatgttgcaatcccattcctccactggttcgtaaatat
gtccacgatcttcacaagatcatcgtcgatgcccgaaataaacccattagcgagttgacc
gtcactccactcccggataccaatgtcccgataactacgccagatcatgtcgatccacag
ccatctgcacccggttctatggtatactctaccttcgtaccggcccctcctcatgaccaa
tctcatggtttccaaccttccagtaaagtcgcagtgacaactgccaaagatctggaaacc
ggtccatcacctcttggtcggatcttcggtgatgagaatacacagcatatggacgacaca
tccgagataacatgccagaaatggtgggcatcgcgtttgatggatcctaaccgccttctt
ctgaatgagctttcacggcttctatcgatcgggttgactgaaggcagcaagaccttttca
agtgaaatgacatacaccaaggacactattgtacagccagctgcatcagcaccgcgacaa
acgccagctgagccgatcatcaagttagaattggacgataaacccaacgaaactaatcgc
ccaatcgttccttcgaaacaaaaaggcttcttggctggcaagcctcaagtgcttacagac
ccagactcgtccacaactgcagctgcaccgaatttcaactcagatgaggttgtaatactt
cgacaagaaatgccttcgcgtaataaacgcagtggtcgccaacgaaaaagaaaacaacct
gctgatcactctttcgttcaagacgtttcaggtgcaaatgaaatctctgattccggaacc
gcatcagaaaatttcacagagacacacgtagcaatgagaggaatggcctcccagaggtcc
aagatgagtcgaaagccgcgcaacaccgcacagacccgaagaacacgtggcaacattcac
catcaaggacgaaagtcttaa

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