Opisthorchis viverrini (Southeast Asian liver fluke): T265_06949
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Entry
T265_06949 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03013
Nucleocytoplasmic transport
ovi03015
mRNA surveillance pathway
ovi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
T265_06949
09122 Translation
03013 Nucleocytoplasmic transport
T265_06949
03015 mRNA surveillance pathway
T265_06949
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_06949
03041 Spliceosome [BR:
ovi03041
]
T265_06949
Enzymes [BR:
ovi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
T265_06949
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
T265_06949
Spliceosome [BR:
ovi03041
]
Complex C
Other components
EJC/TREX
T265_06949
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
T265_06949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
UvrD-helicase
AAA_19
P-loop_SecA
DUF8110
Motif
Other DBs
NCBI-GeneID:
20321128
NCBI-ProteinID:
XP_009170616
UniProt:
A0A1S8WI01
A0A074ZQR0
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MADESELLDYEDEEQETVQETRPNGEAPAKKGVKGAYVTIHSSGFRDFILKPELLRAIVD
CGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVIATLQQLDPEEEANTSVLVLCH
TRELAFQISKEYERFSKYMPKIKVGVFFGGLPIRKDIETLSKSPVHIVVGTPGRILDLIR
NQALKLQHVKHFIIDECDKMLDMLDMRRDIQEIFRMTPHQKQVMMFSATMSKEIRPVCRN
FMQDPLEIFIENDSKLTLHGLRQHYVKVKENEKNRKLFELLDELQFNQVIIFVKSVQRCI
ALAQLLVDQNFPAIAMHRQMTQEERLERYQAFKNFQKRLLVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFISDEVDAKVLNDVQNRFEVNISELPDVMEIS
SYMEDR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaatcggaactcctggactatgaagacgaagaacaagagacagtacaagaa
actcgcccaaacggtgaagcaccagcgaaaaagggcgttaagggtgcttatgttacaata
cacagttccgggttccgtgacttcatcctgaaacccgaacttctgcgagcaatcgttgac
tgcgggttcgagcatccctcagaggttcaacatgagtgtataccgcaagccattcttagt
atggatgtcttgtgccaggcaaaatctgggatgggaaagactgctgtgttcgtaattgct
accctgcagcagttagatccggaagaagaggcgaacaccagtgtgctagtactgtgtcac
acgagagagctggcgtttcaaattagcaaggaatatgaacgtttctccaaatatatgccg
aagataaaggttggtgtattttttggaggcctcccaatccgtaaggacatcgagacgcta
tcgaagtcgcccgtgcacatcgtggtcggaactcccggtcggatactggatctgatacgc
aaccaggccctgaagcttcagcacgtaaagcacttcattatcgacgaatgtgacaaaatg
ctggatatgctcgacatgcggcgcgacattcaagagatcttccgaatgaccccacatcaa
aagcaagtcatgatgttcagtgcgacaatgagcaaggaaattcggcccgtctgtcgcaat
ttcatgcaagatcctctggaaatcttcatcgaaaatgactccaagctcactctccatggt
ctacgccagcactacgttaaggtgaaagaaaacgagaaaaaccggaaattgttcgagttg
ttagacgagcttcagttcaatcaggtcattatcttcgtgaagtccgtccaacgctgcatc
gccctggcgcaactgctggtcgaccaaaactttcctgcaatcgcgatgcaccgccaaatg
acccaggaggaacggcttgagcgataccaggcattcaaaaactttcagaaacgcctgctt
gtcgcgactaatcttttcggtcggggcatggatatcgaacgggtcaacatcgttttcaac
tacgacatgcctgaagattctgacacctatctccaccgagtcgctcgcgctggtcgattt
ggaacgaagggcctggcaatcacatttatttccgacgaagttgatgctaaagttctgaac
gacgtacagaatcgcttcgaagtcaatatcagcgaacttccagatgtcatggaaatctcc
agttacatggaagatcgctaa
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