KEGG   Opisthorchis viverrini (Southeast Asian liver fluke): T265_07880
Entry
T265_07880        CDS       T04902                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ovi  Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03018  RNA degradation
ovi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ovi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    T265_07880
  09123 Folding, sorting and degradation
   03018 RNA degradation
    T265_07880
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ovi03019]
    T265_07880
   03041 Spliceosome [BR:ovi03041]
    T265_07880
Messenger RNA biogenesis [BR:ovi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     T265_07880
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     T265_07880
Spliceosome [BR:ovi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    T265_07880
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 20322059
NCBI-ProteinID: XP_009171794
UniProt: A0A074ZFN5
LinkDB
Position
Unknown
AA seq 161 aa
MVSQFLSVYAHSQLPITLLKAAINLPMLVELKSGETYNGHLAACDDWMNIHLKEVICTSR
DGDRFWRMPECYIRGSIIKYLRIPDDVIDKVKEDIQLAKARSRSQSADGARGGFHRNKGK
GRGAPGTGGPRGGGRGGSVGRGGAPGGGGGGGPGRGSFRGK
NT seq 486 nt   +upstreamnt  +downstreamnt
atggtaagccagtttctgtcagtttatgcacactctcagttacccataaccctactaaag
gcagctatcaaccttccaatgttggttgagctgaagagtggtgaaacatacaacggacat
ttggctgcttgtgatgattggatgaatatacacttgaaagaagtgatatgcacttcaagg
gatggtgaccgattttggaggatgccagagtgctacatacgtggaagtatcattaaatac
ctccggataccggatgatgttatcgacaaagtcaaggaggatatacagttggcgaaagct
cgcagtcgctcgcaatctgctgatggtgcaagaggtggctttcatcggaacaaaggcaaa
ggtcgaggtgctccaggcaccggtggtcctcgtggtggtggacgaggaggttccgtggga
cgaggaggtgcccctggtggtggtggtggtggtggacctggccgtggaagcttccgtgga
aaatga

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