Opisthorchis viverrini (Southeast Asian liver fluke): T265_09261
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Entry
T265_09261 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K06100
symplekin
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
T265_09261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovi03021
]
T265_09261
03019 Messenger RNA biogenesis [BR:
ovi03019
]
T265_09261
Transcription machinery [BR:
ovi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
T265_09261
Messenger RNA biogenesis [BR:
ovi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
T265_09261
U7-dependent histone pre-mRNA processing factors
T265_09261
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
20323434
NCBI-ProteinID:
XP_009173550
UniProt:
A0A074ZHI9
LinkDB
All DBs
Position
Unknown
AA seq
1895 aa
AA seq
DB search
MSQPTQLLVLDTFFNGSTRCTTENALSSCLVTDLLTPTHTSYGSETTIIVALLNEASLTD
DVDQKVVKLLRVKELTIHQESSLLDNFFEEVAAFQHDTSLGVRKVVISFIQDACLADPTL
VKKAVGNLFYLFSSAIQQDPPGYSLLRSLTLSMVPIYRVALTRAVKVGIIESGVTIGGST
GIPADSAADVALETFRSVAGLKDEIIRLLLPTSVPGQSAFGFLSPITLNDSARTGVLRLV
EAVIILHSRRLPNSDIPRENEGDISLDQIPDMTNAQLQSVLEASTAASSATLLPGVCLVR
PRRLGEEAERLFSGLLDLPMRGKTGNKPISPPVMEDVMDCLVRIAKQRPQFMDRVVQSFE
TVHVTLPPHFSVVQVGTVRKKLKTCLLQLLRHPASVSDYQGRITILLTDLGATQAEVVAA
LQRPSDFRHLLPPGASESEATDHGDVDMRQMSAIRPDLAGRPPPITQLTSPINSSRISAA
HPSAVSTHPDGVTLKIQPPSSLHTTSIDPRSAGQANFSMADAEAALRFDDDDDDDEDDIQ
IIRSRRPRAKRQSTATSVVVSTSASAVSATGDAGKMSVAGGKLGQLQAELPSVDFVTNRL
VPRLTTANVADLVLLSMVTLPDQMPAAFQSTYTPIAAAGTSAQIRHLARLLAVQLVVWAG
EASHPDPTENLSQLESLLRPSQEELEQMAGPGIKRPSKLDASDAAGLKDGVRVKKRRVTT
VGDKPGADNDAEDEDAMIRANAARRMHGAAPMNISTVINYGQQPIPVSSASNLDNALLGG
LTSAPISGLPPMFPPNVPPPGLGGSNVILPTFDPSQPPPPLSAVPPHSVPSASAAFGPMV
ATAPTIPVPVSIPEIVPPASTIPARPFSLDAVTTPLPRALQRQLARDAFQRILDGFEDST
ARRIPVGTDNQLLLTSIGGTEPGSTTQQLCRMKLLTRLTTRRFGGNEFYSILIDYAIKNL
RHGFELLSKLLMQEYCRFRGFQLSEFGNFLIARRRQLARLRGRSRKPSTSTGGGLDDSAD
DELKRGTEVSEREPELSNPLSEEELERDFSRDAAGSTDDQVTEDSGQFLDSPTASPRGLS
GSSEGVDNKQSALKTIKPEPRDSKARLVSSPDDLGCLSFYDCLLIDVLQRLSHPDVRQSY
FGRLLIEAPLLTAGALSVLKRYCWSASQAGYGFQVLRTLIELRPVGQREDLLYMLLNFCA
VDDTEVRKAALSATRELVALNTGWQDHIEAFAINSLKKLLQPRPTADIFPFSTQPVIPPS
WNDEACQACAHLFLGLMPQIPALMHDLAEVYVGASPEVKRCTLRMIDTPIREIGLYSADL
HDLVDQCPVGAETLITRMLHLLTDSPSAMAAAQATATAAAAAAAVASSAASSTQGTTPIS
SAPQVSAITGNSPPVIIPPKSLVDRDVILALPRLVQLSEKVVKEVLARLLHASVSTQYAQ
PVPGVRNVEDSIPSPNTEAPLGPLKPEEILVAIHLLEFAKDPSAPATDAKSSKPYISLQA
ILHACRVCFAERRLFTQERLSAAIGQLLEQPTLPTLFMRTVMQALALHPRLAGYVINVLV
RLIRKQVWKSEKLWDGFIRCCVKTRPQSYQVLLQLPPERLEDVFRREPAMRTQVRRYVEN
FSSAQRIHISKSIVEVLERVPTPPPQPTKGAATAEMGSKAEEALEISASPPPSPLSSGPG
TPTRDEIPHQDISAAALAVAVVMLGNNATSTQSGAVQPQPYSLMPRQAHPPSPSTFSPSG
EASEHHSRSPFGNESYLASRTSTMDQERERVTEPSADDDLEPPTLPPTRIFSTLSKLPDR
SVHSDNSDDGTARLLELVDQTPLDWSTEDADDFILRDPKPPDDSRQPKRPVDLEKLEADR
RRLEEEASKFRKLRAERKQAQSSHDSPVPESNADQ
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaccaacgcagcttctggtgctggacacatttttcaatggaagtacccgttgc
acaaccgaaaatgcgctttctagctgcctcgttacggatttgctgacaccaacccacacg
agctatggttctgagacaacgattattgttgcccttctgaatgaagcatccctaacagat
gatgtggaccagaaagttgttaaactcttgcgcgtcaaagagttgaccattcatcaagaa
agttcattattggacaatttttttgaggaagttgctgcctttcaacatgatacaagtttg
ggtgtacgcaaggtggtcatcagtttcattcaagacgcatgtctggccgaccctactctg
gtcaaaaaagcagttggcaatctgttctacctattctcctcggcaatccaacaggatcca
cccgggtacagcttgctaagaagtctcacgctctccatggtccctatctaccgtgtcgcc
ctgacacgcgccgtcaaggttggtatcatcgagtctggggtcaccattggcggttcgact
gggattcccgcggactcagcggccgatgttgcactcgaaacgttccgcagcgtcgccggc
ttgaaggatgaaattattcgcctccttttacctacttcggtccctggccagtcggctttt
ggatttttgagccccatcacgctaaatgacagtgctcggacaggcgtcctccgtctggtt
gaggcggtcatcatactacactcacggcgccttccgaattcggacatcccacgggagaac
gagggagacatttccctagatcaaattcccgacatgaccaatgcacaactccagagtgtt
ttggaagccagcacggcggcttcctcggccacattgcttcctggcgtttgcttggttcgt
ccgcgtcgtcttggagaggaggccgaacggttgttttccgggctcctggatctaccaatg
cgaggcaaaacaggcaacaaaccgataagccctccagtgatggaagacgttatggactgt
ctggttagaatcgcaaaacagcgtccacagtttatggatagagtggtccagtcgttcgag
acggtccacgtcaccctacctcctcacttctccgtggttcaagtgggcaccgtacggaag
aagttgaagacctgtctcctgcagcttttgcggcatcctgcctctgtttccgactatcag
ggtcgaatcaccatcttgctgactgatttgggagctacccaggccgaggttgtcgcagcc
ctccagcgaccctccgatttccgtcaccttcttccacccggggcctcagaatcggaagct
actgaccatggcgatgtggacatgcgccaaatgtcagccatacgaccggatctagcgggg
cggccccctccaataactcagctcacgagtcccatcaattccagccgaatttccgctgct
catccctctgctgtatcaactcatccagatggtgtcaccttgaaaatccaaccacccagt
tcactacacaccacatccatcgatcctcgctcggctggacaagcgaacttctcgatggct
gatgctgaagccgccctcaggtttgacgacgatgatgatgacgatgaggatgatatacag
attatccgttctcgccgtccacgtgctaagcgacaatcgaccgcaacatctgttgtggtt
tcaacaagcgcctccgcggtgtctgcaacgggtgatgcggggaaaatgtcagtggctggt
ggcaaactcggtcaacttcaagccgagctgccctcggtggatttcgtcacaaatcgactc
gtgcctcggttgaccacggctaatgtggccgatttggtgctgcttagtatggtcaccctc
cccgatcaaatgccagccgctttccagtcaacctatacgccgattgctgcagctggtact
tcagcgcaaattcgccatctggcacgcctgttagctgtgcagttggttgtctgggccggc
gaagccagccatcccgatccgacggagaatctgagccaactggaaagtctgttacgtccg
tcacaagaagagttggaacaaatggctggaccagggatcaaacgaccctctaagctggat
gcctcagatgccgcgggactgaaggatggagttcgagttaagaaacgccgagtgaccact
gtcggggacaaacctggtgcggataatgatgcggaagatgaagacgccatgattcgggca
aacgcagctcgtcgaatgcatggcgctgcaccaatgaacatttccaccgtgatcaactat
ggccaacaaccaatcccggttagttcagcttcgaacttggacaatgcacttttgggtgga
ttgacttccgccccaatctccggtctgccacccatgttcccaccaaacgttccgccacca
ggccttggcggatcgaatgtgattttacctacattcgacccatcacagcctcccccacca
ttgagcgcagtgccaccgcattccgtgccatccgctagtgccgccttcggaccaatggtt
gcgaccgctccaacaattccggtgcctgtgtcaattccagagattgttcctccggcaagc
actattccagctcgaccattctctctggacgcggtcaccacgccattgccgcgcgcactc
caacgtcagctggcccgggatgcctttcagcgtattttggatggattcgaagattcgaca
gcacgccggattcccgttggtacggacaatcagctcctactaaccagcatagggggaacg
gaaccggggtcgacaacacagcagctgtgtagaatgaaactgcttacccgtttaaccacc
cgtcggttcggtgggaatgagttctacagcattttgattgattatgccatcaaaaatcta
cgccacggatttgagcttttatccaaattactcatgcaagagtattgtcgttttcgtggc
tttcaactctcggaattcggtaactttttgattgctcgacgtcgacaactggcacgtttg
aggggcagatctcggaaacccagcacatctactgggggcggtcttgatgattctgctgat
gacgagctcaagcggggaaccgaagtcagtgagcgtgagccagaactttccaatccattg
tcggaggaagaattagagcgggactttagccgggacgctgccggttctacggacgatcag
gtgactgaagactctggtcaatttcttgactctccgactgcctcacccagggggctttca
ggcagcagtgagggtgtagataacaagcaatctgccctaaagacgataaaaccggaacca
cgcgacagcaaagcccgcctggtttcgtccccggatgatcttggctgcttatcgttttac
gattgcctgctgatcgatgtacttcagcgactctcacatccggacgtccgccagagctac
ttcgggcgcctcctaatagaggctccacttctgactgccggtgctttgagtgtcctgaaa
cgctattgctggagtgcttcccaagcaggctacggtttccaggtactgcgtaccctaatt
gaacttcgtccagtcggacaacgggaggatttattgtatatgcttctcaacttctgcgca
gtcgatgatactgaggttcgaaaggctgccctttcggccacacgcgagcttgttgctttg
aatacaggatggcaagatcacatcgaggctttcgccatcaactcgttgaagaaactgcta
cagccgcgacccacggctgacatattcccgtttagtacacagcctgttatcccgccatcg
tggaatgatgaggcttgtcaagcctgtgctcatctcttcttgggtttgatgcctcaaata
ccagccttgatgcatgacttagctgaggtctacgtgggtgccagtccagaggtgaaacgc
tgtacgcttcgcatgatcgatactcccatccgtgaaattggtctctattctgctgacttg
catgacctggttgaccagtgtccagtcggtgcagagactctcataacgcgaatgcttcac
ttactcaccgattcaccgtctgctatggccgctgctcaggcgacagccacagccgccgcc
gccgctgctgctgtcgcatcgtccgctgcttcgtcgacacaggggaccacgccgatctcc
tccgctccacaagtgtctgccatcactggcaactctccacccgttatcattcctcctaag
agtctggttgaccgggatgtgatcctggcgctgccacgtttggtacagttgagtgaaaag
gtggtgaaggaggtgctcgctcgtttattgcatgccagtgtgtctacccagtatgctcaa
ccagtccccggtgtccgaaacgtcgaggattccatccccagtccgaatacggaagctcct
ctaggtcccctgaaaccagaagaaatactcgtggcgatccatttgttggagtttgccaag
gatccttccgcgccagccacggacgcgaaatcttccaagccctacatcagtttgcaagcc
attcttcacgcttgccgcgtatgctttgctgaacgtcgtctattcacgcaagagcgattg
tccgcagcgatcggacaacttctggaacaaccaactttgccaaccctgttcatgcggact
gtgatgcaagcattggcgttacatcctcgcttggccggctacgtaatcaacgtgctggtt
cgcctgattcgcaagcaggtgtggaaaagtgagaaactttgggacggattcatccggtgc
tgcgtcaagacgcgaccgcaaagctatcaggtcctgctccagttaccaccggaacgatta
gaggatgtgtttcggcgtgaaccggctatgcgcacccaggttcgacgttatgtggagaac
ttttcatctgctcagcgtatacacatctccaaatcaatcgtagaggttcttgaacgagtc
ccgacaccaccaccacaaccaaccaaaggcgctgctacggcagaaatgggatcaaaggca
gaggaggcgcttgaaatatcggcatctcctccacccagtccgttatcttccggccctgga
acgcctaccagggacgaaattccgcaccaagatatctctgctgctgccttggctgttgcg
gttgtgatgcttggaaacaacgccacatcaacgcagtctggggcggtccaaccacagccc
tacagtctaatgccacgccaagctcatccaccttcgccttccacattcagtccttctgga
gaagcatctgagcatcactcaagatctcctttcggaaacgaatcatacttggccagcaga
acatcaacaatggaccaagagagagaacgggtaaccgagccctcagcagatgatgacctg
gagccacccaccctccctccaacacgaattttctcaacactatcaaaactgccggatagg
tcagttcactcggacaactcggacgatgggacagctcgtttgcttgaactggtggaccag
acacctttggattggtctaccgaggatgctgatgacttcatcctacgtgatccaaaacca
ccagacgattcacgacaaccaaagcgcccggtggacttggagaagttggaagctgacagg
aggcgtttggaggaagaagcgtcaaagttcagaaaattgcgagcggaacgtaaacaagcc
cagtcatctcacgacagtcctgtgccggagtccaatgcagaccaatga
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