Opisthorchis viverrini (Southeast Asian liver fluke): T265_13991
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Entry
T265_13991 CDS
T04902
Name
(RefSeq) hypothetical protein
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ovi
Opisthorchis viverrini (Southeast Asian liver fluke)
Pathway
ovi03020
RNA polymerase
ovi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ovi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T265_13991
09124 Replication and repair
03420 Nucleotide excision repair
T265_13991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovi03021
]
T265_13991
03400 DNA repair and recombination proteins [BR:
ovi03400
]
T265_13991
Enzymes [BR:
ovi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T265_13991
Transcription machinery [BR:
ovi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
T265_13991
DNA repair and recombination proteins [BR:
ovi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
T265_13991
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
20328158
NCBI-ProteinID:
XP_009169812
UniProt:
A0A075AE14
LinkDB
All DBs
Position
Unknown
AA seq
1203 aa
AA seq
DB search
YIIDPFYAEEELEDFEEDDGGHGIYGDERDAEDDEITPDMWQEACWIVISSYFDEKGLVR
QQLDSFDEFIQTSIQKIVEDSPIIELQAEAQHTSGVLETPVQYRLKFEQIYLSKATHWEK
DGSSVPMTPNDARLRNLTYAAPLYVDVMKKIIRDDGEEEKPLEKKFIGKIPIMLRSTYCL
LSIMSDRDLAELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFRQKDSKYAYKTEIR
SVLEHSSRPASTLWINMMARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVAD
RDILEHIIYDFDDTEMREMIKPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKE
ILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLA
FLFRGLFRNLTKEIRLYAQKFIDKGKDFNLELAIRSQIITDGLKYSLATGNWGDQKKANQ
ARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVG
LVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHNSPD
HLMVTLRKLRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIE
FLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAXWLKCKLQCTTVKRIP
IIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYISNFHTRMDTLANVLYYPQK
PLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKD
QEARHGMDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGKTITLPEN
EDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTTKTPQVGDKFA
SRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEI
GDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYYQRLKHMVD
DKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFFASDPYQV
YVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSIAPRMMVTGT
TSH
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
tatatcatagaccccttctatgcagaagaagagttggaagacttcgaggaagatgatggt
gggcatggaatctatggcgatgagcgtgatgcagaggacgatgagattactcctgacatg
tggcaagaggcttgttggattgtgattagcagctatttcgacgagaagggcctcgttcga
caacaactagactccttcgacgaattcattcagacatcaattcagaagatagttgaggat
tcacctatcatcgaattacaagccgaagcacaacacacaagtggcgtattggaaacacct
gttcagtatcggctgaaatttgagcagatctatctcagtaaagcaactcactgggaaaag
gatggatcctctgttcccatgacgccaaatgatgctcgcttgcgcaatttgacctacgcg
gcacctctttacgtagatgtgatgaaaaaaatcattcgggatgatggcgaagaggaaaaa
ccacttgaaaagaaattcattggaaaaattcccatcatgttaagatctacatactgcttg
ctttccatcatgagtgatcgagacttagctgaactgaatgaatgtccccttgatccagga
ggatatttcattattaatggctcggaaaaagtattgattgcacaagaaaagatggcgaca
aacaccgtttacgtatttcgacagaaggacagcaagtatgcctacaaaactgaaatccgt
tcggtgctagagcacagctctcgaccagccagcacattgtggataaatatgatggctcgt
ggtggcaaagatggaagcaagcgagcgacgataggacagcgtattgtcgctattctccct
tatatcaaacaagaaattcctgtactcatcgttttccgtgctcttggatttgttgctgac
cgagatatcctcgaacatattatctatgactttgatgacacggaaatgcgcgaaatgatc
aagccttctttggatgatgcatttgtgattcaggaacaaaaggttgcactgaatttcatt
ggttcaagaggtgcgcgtcccggtgtgacaaaggagaagcgtatcaaatacgccaaggag
attttacagaaagaaacacttcctcatgttggtgtttcagatttttgtgaaacgcgcaaa
gcctacttccttggttacatggtgcatcgcctacttttagctgctctgaaacggcgggat
gttgatgacagagatcactacgggaacaagcggttggacctagcagggcctttgttagcc
ttcctgtttcgtggcttattcagaaatctaacgaaagagattcgattgtatgctcagaaa
tttattgacaagggaaaagacttcaacctggaattggcaattcgtagtcagatcatcacc
gatgggcttaagtattctctggctactggtaactggggtgatcagaagaaggctaatcag
gcccgaccaggcgtgtctcaggtgctcaatcgattgactttcgcatccaccttatcacat
cttcgtcggctgaactcccccatcggtcgcgatggcaagcttgccagaccacgtcagttg
cacaacaccttgtggggtatgatttgtcccgctgaaacccccgagggaagtgctgtaggc
ctggtgaaaaatctggctttgatggcttacatatctgtgggtagccaaccttcaccaatc
cttgaattcttggaagagtggagtatggaaaatttggaagaaatcgctccttccgcaatt
ggaaaaacttgtaaaattttcgtcaacggttgttgggttggaattcacaactcccctgac
cacttgatggttactctgcgtaaattgcgtcgccaagtggatgtgattgtgagtgaagta
agcatggtacgtgactaccgagatcaagaaatccgaatttataccgatgctggtcgcatt
tgtcgcccgttggttatcgtggagaaaggaaagctgctcttgaaacgcagccacatcgag
ttcctaaaggacaaggcctacaatcgttatagctggcaagatttggttttgagtggagtg
gtggaatacatagacactctggaggaagaaactgtgatgattgctatgggtcctgctgaa
atgcaagctgcangctggctgaaatgcaagctgcagtgcactactgtaaaacgcataccc
attattcatcccagcatgattcttggcatttgtgcgagcatcattccgttccctgatcat
aaccagtcaccaagaaatacctatcaaagtgctatgggtaaacaagccatgggtgtgtac
atcagcaatttccacacacggatggatacgttggcgaacgttctctactatccacaaaaa
ccgctggttgctactcgatcgatggaatacctgcgcttccgtgagctccccgctggtatt
aatgcgatcgtagcgatcgcaacatacacgggttataatcaagaggattctgtcatccta
aacgaaagtgctatacaacggggctttttccggtcggagttctaccgaacttacaaggat
caggaggctcgccatggaatggatcaggaggaagtgtttgaaaagccgaacccgcagcaa
tgtcaaggtatgcgtcatgccatctacgacaagctggatgatgatggtttgattgctcct
ggtacccgtgtttctggtgatgatgtcctcattgggaagacaataaccttaccggagaat
gaggatgagatggaaggtggacaacggcgatacaccaagcgagatgccagcgtattcatg
cggcgaagtgagtacggtattgtggatcaagtcatgatcacatggaacaacgaggggaac
aaattttgtaaggttcgtgtgcgcacaaccaaaactccgcaagtgggtgacaagttcgcc
agtcggcatggacaaaagggtacttgtggtattcggtaccgacaagaagatatgccgttc
acttgtgaaggcattactccagatatcatcatcaatccccacgctatccccagtcgtatg
actatcggtcacttaattgaatgcttacagggaaaagttagtgcgaacaaaggcgaaatc
ggtgatgcgacaccgtttaatgatgccgtgaatgtgaggaagatctctttgctgcttcaa
gaatacggctatcagcatactggcaatgagatcatgtacaacggattcactggccggaag
ctgaattctcaaatttttctcgggcccacctattatcaacgcctgaagcatatggtcgat
gacaaaatccacagtcgagcacgtggtccggttcaaatactcaacagacaacccatggag
ggccgtagtcgggatggtggtctccgtttcggcgaaatggaacgggattgccaaatcgcc
catggagcagcgcaatttttgcgcgagcgcttgtttttcgccagtgatccctatcaggtt
tacgtgtgcaatttgtgtgggttgattgctattgcgcaccaacggaataaaacctacgaa
tgtcgaagctgcaaaaatacaactcagatatccctggtgaaactgccatatgcatgcaaa
ctgctcttccaagagctcatgtcgatgtccattgcgccacgcatgatggttacagggacc
acctcacactga
DBGET
integrated database retrieval system
