Odocoileus virginianus (white-tailed deer): 110122083
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Entry
110122083 CDS
T10722
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr02010
ABC transporters
ovr04148
Efferocytosis
ovr04975
Fat digestion and absorption
ovr04979
Cholesterol metabolism
ovr05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110122083 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110122083 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
110122083 (ABCA1)
04979 Cholesterol metabolism
110122083 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110122083 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ovr02000
]
110122083 (ABCA1)
Transporters [BR:
ovr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110122083 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Mst1_SARAH
Motif
Other DBs
NCBI-GeneID:
110122083
NCBI-ProteinID:
XP_070315452
UniProt:
A0ABM4HIQ5
LinkDB
All DBs
Position
31:17198635..17331471
Genome browser
AA seq
2263 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLFLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSHRDT
SMKDIRKVLKTLYQIERSSSRLKLQDFLVDNETFSEFLHLNLSLPRPTVDKMLGADVSLR
KVFLQGYQLHLTNLCNGSKLGEVIRLGDQEVSRLCSLPREKLNAAEQVLRSNLDILKPIL
TKLNSTSLFPSEELAEATKALLDSLGNLAQELFSMRSWSDMRQEVMFLTNVNNSGSSTQI
YQAVSRIICGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSSSPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPVTRQLMTEVNKTFQELAVFHDLEGMWQELS
PKIWTFMESSSEMDLVRTLLDSRANDDFWEQQLEGLDWKAKDIMAFLAKHPEDVQSPNGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGVVFTG
IAPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTERKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFISSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLCVFATVTILQCFLISTLFSRANLAAACGGIIYFILYLPYVLCVAWQDYVGFTLKIFMS
LMSPVAFGFGCEYFALFEEQGIGVQWDNLFESPTKEDGFNLTTSVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEESDEKSHPASSQKGASEICMEEEPTHLKLGVS
IQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSYLKKVVSELPPAGQSGGTGGEVQRLVALTQDVSAISNLIRKHVAEARLVE
DIGHELTYVLPYEAAREGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVD
AETSDGTLPARRNRRVFGDKQSCLRPFTEDDAMDPNDSDIDPESRETDLLSGMDGKGSYQ
VKGWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLE
LQPWMYNEQYTFVSNDAPEDVSTQELLNALTGTPGFGTRCMEGNPIPERPCLVGEEKWTT
APVPQTITNLFRNGNWTMENPSPTCQCSSDKIKKMLPVCPLGAGGLPPPQRKQNTADILQ
NLTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNSQSLPPSEEVNDAIKQM
KKHLKVVKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANL
QKGANPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQ
ERVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVL
ALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNN
INDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAV
EGVVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELT
KVYRRKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTGDTTVTKGDAFLNKNSIL
SDIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYG
EKYAGNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVV
LTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEF
FELAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFV
NFAKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6792 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctggcctcagctgagattgctgctgtggaagaacctcactttcagaagaaga
cagacatgtcagctgtttctggaagtggcctggcctctattcatcttcctgatcctgatc
tccgtgcggctgagctacccaccctatgaacaacatgaatgccactttccaaacaaagcc
atgccctctgcaggaactcttccttgggttcaggggatcatctgtaatgccaataacccc
tgtttccgttatccaactcctggtgaggctccgggagttgttggaaactttaacaagtcc
attgtatctcgcctgttctcagacgctcggcggcttctcttgtacagccacagagacacc
agcatgaaggacatacgcaaagttttgaagacgttataccagatcgagcgttccagctca
cgcttgaaacttcaggacttcctggtagacaatgaaaccttctctgaattcctgcatctc
aacctctctctgccaaggccaactgtggacaagatgctgggggctgatgtcagtctccgc
aaggtatttttgcaaggctaccagttacatttgaccaatctctgcaacggatcaaaattg
ggagaggtgattcgacttggtgaccaagaagtttccaggctttgcagcctgccgagggag
aaattgaacgcagcagagcaggtgcttcgttccaacctggatatcctgaagccaatcctg
acaaaactaaactctacatccctcttcccgagcgaggagctggctgaagccacaaaagct
ttgctggatagtcttgggaatctggcccaagagctgttcagcatgaggagctggagtgac
atgcggcaggaggtgatgtttctgaccaacgtgaacaactccggctcctccacccagatc
taccaggctgtgtcccgcatcatctgcggccatcccgagggcgggggcctgaagatcaag
tccctgaactggtacgaggacaacaactacaaagccctcttcgggggcaacggcacggaa
gatgacgctggcaccttctacgacaactcttcgtctccttattgcaatgatttgatgaag
aatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcccctgcttgtt
ggaaagatcctgtatacacctgacactccagtcacaaggcagcttatgactgaggtgaat
aagaccttccaggaactggctgtgtttcatgatctagaaggcatgtggcaagagctcagc
cccaagatctggacctttatggagagcagctcagaaatggaccttgtccggacactgttg
gacagcagagccaatgatgacttttgggaacagcaattggaaggcttagactggaaggcc
aaagatatcatggcatttctggccaagcacccagaggatgtgcagtcccccaatggctcc
gtgtacacctggagagaagccttcaatgagaccaaccaggcaatccagaccatctctcgt
ttcatggagtgtgtcaacctgaacaagctagaaccagtagcgacagaggttctgctcatc
aacaagtccatggaactcttggatgagcgcaagttctgggctggcgtcgtgttcactgga
atcgctcccggcagtgtcgagttaccgcatcatgtcaagtacaagatccggatggacatc
gacaatgtggagaggacgaataagatcaaggacgggtactgggaccctggtcctcgggct
gacccctttgaagatatgcggtatgtctggggaggcttcgcttacttgcaggatgtggtg
gagcaggcaatcatcagggtgctgacgggcacagagaggaaaactggcgtgtacatgcag
cagatgccttacccctgttatgttgatgacatcttcctgcgggtcatgagccggtccatg
cctctcttcatgacgctggcctggatctactcagtggctgtgatcatcaagggcatcgtg
tacgagaaggaggcgcggctgaaggagaccatgcgcatcatgggcctggacaacggtatc
ctctggttcagctggttcatcagcagcctcatccctctgcttgtgagcgccggcctactg
gtggtcatcctgaaattaggaaacctgctgccctacagcgaccccagcgtggtgtttgtc
ttcctgtgtgtgtttgccacggtgaccatcctgcagtgcttcctgattagcacgctcttc
tccagagccaacctggcggccgcctgtggaggcatcatttacttcattctatacctgccg
tatgtcctgtgtgtggcgtggcaagactacgtgggctttaccctcaagatcttcatgagc
ctgatgtctcctgtggcttttgggttcggctgtgagtacttcgcccttttcgaggagcag
ggcattggggtacagtgggacaacctctttgagagccccacaaaggaggatggcttcaac
ctcaccacctccgtctccatgatgttgtttgacaccttcctctacggggtgatgacgtgg
tacatcgaggctgtgtttccaggccagtatggaatccccaggccctggtattttccttgt
actaagtcctactggttcggcgaggaaagtgatgagaagagccaccctgcttccagccag
aagggagcatcagaaatctgcatggaggaggaacccacccatctgaaactaggtgtgtcc
attcagaacctgatgaaggtttaccgagatggcatgaaggtggctgttgatggcctggcc
ttgaatttctacgaggggcagatcacctccttcttgggccacaatggagctggcaagacc
accaccatgtccatcctgactgggttgttccctcccacctcgggcactgcctatatccta
gggaaagacatccgctccgagatgagcaccatccggcagaacctgggggtctgtccccag
cataatgtgctgttcgacatgctgactgtcgaggagcacatttggttctacgcccgcctg
aaagggctctccgagaagcacgtgaaagctgagatggagcagatggccttggatgttggt
ttgccgccaagcaaactgaaaagcaaaacaagtcagctgtcaggtggaatgcagagaaag
ctgtctgtggccttggcctttgttgggggatccaaggttgtcattctggatgagcccaca
gccggtgtggacccttactcccgcagggggatatgggagctgctgctgaaataccgacaa
ggccgcaccatcatcctctccacgcaccacatggatgaggcggacatcctgggggacagg
atcgccatcatttcccacgggaagctctgctgcgtgggctcctccctgttcctaaagaac
cagctggggacaggctactacctgaccctggtcaagaaggacgtggagtcttccctcagc
tcatgcagaaatagcagtagcactgtgtcatacctgaaaaaggtggtgtctgagcttccc
ccagctgggcagagtggaggcacaggaggagaggtgcagaggctggtggcgctgactcaa
gatgtctccgcgatctccaacctcatcaggaagcatgtggccgaggcccggctggtggaa
gacatcgggcatgagctgacttatgtgctgccctatgaggcagccagagagggagccttt
gtggaactcttccacgaaattgacgaccggctctcagacctaggcatctccagttacggc
atctcagagactactctggaagaaatatttctcaaagtggctgaagagagtggagtggat
gccgagacctcagatggcaccttaccagcaagacgaaacagacgagtctttggggacaag
cagagctgtcttcgcccttttactgaagacgatgctatggatccaaatgattccgatata
gatccagaatccagagaaacagacctgctcagtgggatggacggtaaaggttcctaccag
gtgaagggctggaagctcacacaacagcagtttgtggcccttttgtggaagagactgctg
attgccagacggagtcggaagggattctttgctcagattgtcctgccagctgtgtttgtc
tgcatcgccctggtgttcagcttgattgtgccgccctttggcaagtaccccagcctggaa
cttcagccctggatgtacaatgaacagtacacgtttgtcagtaatgatgcacctgaggat
gtgagcacccaggaactcttaaatgctctcaccggaacacctggctttgggactcgatgt
atggaaggaaacccgatcccagaaaggccctgcttggtgggagaggagaagtggaccacc
gccccagtcccccagaccatcacgaacctcttccgaaatggaaactggacgatggagaac
ccctcgcccacctgccagtgtagcagcgacaaaatcaagaagatgctgcctgtgtgcccc
ctgggggcaggggggctgcctcctcctcagagaaaacagaatactgccgacatccttcag
aacctcacaggaagaaacatttcggattatctggtgaagacatacgtgcagatcatagcc
aaaagcttaaagaacaagatctgggtgaatgagtttaggtacggtggattttccctgggt
gccagtaattctcagtcacttcctccgagtgaagaagttaatgatgccatcaagcaaatg
aagaaacacttgaaggtggtcaaggacagttctgcagaccgatttctcagcagcttggga
aggttcatgacaggactggacacgaaaaataacgtcaaggtgtggttcaacaacaagggc
tggcacgccatcagctctttcttgaatgtcatcaacaatgccattctccgggccaatctg
cagaagggcgcaaaccccagccagtatgggattactgctttcaatcacccactgaacctc
accaagcagcagctctcagaagtggctctgatgaccacatcagtggacgtccttgtgtct
atctgtgtcatctttgcgatgtccttcgtcccggccagctttgtcgtgttcctgatccag
gagcgcgtcagcaaagcaaagcacctgcagttcatcagtggagtgaagcctgtcatctac
tggctctccaattttgtctgggacatgtgcaactacgtggttcctgccacgctggtcatt
atcatcttcatctgcttccagcagaagtcctatgtgtcctctaccaacctgcctgtgctt
gctcttctgcttttgctgtatgggtggtccatcacgcctctcatgtacccagcctccttc
gtgttcaagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggc
atcaatggcagtgtggccacgtttgtgctggagctcttcaccaacaataagctgaataac
atcaatgatatcctgaagtcagtgttcttgatcttcccacatttttgcctgggacggggg
ctcattgacatggtgaaaaaccaggcgatggctgatgccttggaaaggtttggggagaat
cgctttgtctcaccactgtcttgggacttagtgggccgaaatctcttcgccatggctgtg
gaaggggtggtgttcttcctcatcactgtgctgatccagtaccgattcttcatcaggccc
agacctgtaaaggcaaagcttcctcctctgaatgatgaggatgaagatgtgaggcgggaa
agacagagaattcttgatggtggaggacagaatgacatcttagaaatcaaagagttgact
aaggtatacagacgaaagaggaaacctgctgttgacaggatttgcgttggcattcctcct
ggtgagtgctttggacttctgggtgttaatggagctgggaaatcatcaacttttaagatg
ttaacgggagataccactgttaccaaaggagatgctttccttaacaaaaatagtatctta
tcagacatccatgaagtgcatcagaacatgggctattgccctcagtttgatgccatcaca
gagctgctgactggaagagaacatgtggaattctttgcccttttgagaggagtcccggag
aaagaagtaggcaaggttggcgagtgggcgattcggaaactgggccttgtgaagtatgga
gaaaaatatgctgggaactacagtggaggcaataaacgcaagctctcaacagccatggct
ttgattggtgggcctccagtggtgtttctggatgaaccaaccacaggcatggaccccaaa
gcccggcgcttcctgtggaattgtgccctaagtatcatcaaggaagggagatcagtagtg
ctcacctctcacagtatggaagaatgtgaagctctttgcactaggatggcaattatggtc
aatgggcggttcaggtgtcttggcagtgttcaacatctgaaaaataggtttggagatggt
tatacaatagttgtacgaatagcagggtcgaacccagacctgaagcctgtacaggagttc
tttgaactcgcctttccaggaagcgtcctgaaggagaagcaccggaacatgttgcagtac
cagcttccgtcttcactgtcttccctggccaggattttcagcatcctttcccagagcaaa
aagcgactccacatagaagactactctgtctctcagacaacacttgaccaagtatttgta
aactttgccaaggaccaaagtgatgatgaccacttaaaggatctgtcattacacaaaaac
cagacagtagtggatgttgcagtcctcacatctttcctgcaggatgagaaagtcaaagaa
agttatgtatga
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integrated database retrieval system
