Odocoileus virginianus (white-tailed deer): 110123962
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Entry
110123962 CDS
T10722
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110123962 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110123962 (PARN)
Enzymes [BR:
ovr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110123962 (PARN)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110123962 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
110123962
NCBI-ProteinID:
XP_070316961
UniProt:
A0ABM4HN18
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All DBs
Position
33:complement(12872394..13051169)
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AA seq
637 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF
IDQVVKKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERRRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLNQPEQVPIAVNTSKYAESYRIQTYADYVGKKREEKQMKRKWTEDGWKDVEPKRLN
TQCVSYGLQNHHYANSLTATSTAGERSLSPSRAEAGLEARVSGEMSDTELEQTDPCAEPL
SEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatctccacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccgtacttaaaccaggaagaagaaagg
cagttaagagagcagtatgatgagaagcgttcgcagtccaatggtgcaggtgctctgtcc
tacacgtctccgaacacttcgaagtgtcccgtgacaattcctgacgatcagaagaagttt
attgaccaagtggtaaagaaaatagaagatttattacaaagtgaagagaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaagagcgatatattgtt
atcagcaaagtagatgaagaagaacgcagaagaagagagcagcagaagcacgctaaggaa
caggaagaactgaatgatgctgtggggttttctagagtcattcatgccattgctaattcg
gggaagcttgtcattggacacaacatgctcctggatgtcatgcacacggttcatcagttc
tactgccctctgcccgcggacttaaatgaatttaaggagatgacaacatgtgttttcccc
aggctcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagaggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacggcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggccaactacctaggttctttt
cttagtcctccaaagagtcatgtatctgctagatcaaaactcatcgaacctttttttaac
aagttatttcttatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcacgtcctccatgtgacattccccaaagaatggaagaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacgtca
gcatttgtgtctctcaaccagcctgaacaggtaccgattgctgtcaataccagcaagtat
gcagagagctatcgcatccagacctatgctgactatgtcgggaaaaaacgtgaggagaag
cagatgaagagaaagtggacagaagatggttggaaggacgttgagccaaagcggctaaac
acgcagtgcgtctcctatggtttgcagaatcaccattatgccaacagtctcacagccacc
agcacagcaggagagagaagcctgagtcccagtcgagcagaagccggcctggaggcccga
gtctcgggggagatgtctgacactgagctggagcagacagatccctgtgcagaacctctc
tcagaggggaggaaaaaggccaagaaactaaaaaggatgaagaaggacctttctccgaca
ggaagcatctcagacagctcggccaagctcttcgaagtccccgacacgtggtaa
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