Odocoileus virginianus (white-tailed deer): 110125034
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Entry
110125034 CDS
T10722
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03020
RNA polymerase
ovr03420
Nucleotide excision repair
ovr05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110125034 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
110125034 (POLR2B)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
110125034 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ovr03021
]
110125034 (POLR2B)
03400 DNA repair and recombination proteins [BR:
ovr03400
]
110125034 (POLR2B)
Enzymes [BR:
ovr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110125034 (POLR2B)
Transcription machinery [BR:
ovr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110125034 (POLR2B)
DNA repair and recombination proteins [BR:
ovr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110125034 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
110125034
NCBI-ProteinID:
XP_020729528
UniProt:
A0A6J0VW98
LinkDB
All DBs
Position
29:complement(41972024..42015823)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgacgcggacgaggatatgcaatatgatgaagatgatgatgaaatcaccccagat
ttatggcaggaggcttgctggattgtaattagttcctattttgatgagaaaggtttggtg
agacaacaactggattcttttgatgagtttattcagatgtctgttcaaagaattgtggaa
gatgctccacctatagacctacaagctgaagctcagcatgctagtggcgaagttgaggaa
ccgccaagatatttgctgaagtttgaacagatttacctgtccaagcccacccattgggaa
agagatggtgctccatcaccaatgatgccaaatgaggccagattaagaaatctcacgtac
tcggctccactttatgttgatataacaaaaacagtcattaaagaaggtgaagaacaactt
cagacacagcatcagaaaacttttataggaaaaattccaattatgttgcgttcaacttac
tgcctattgaatggcttaaccgatcgtgatctttgtgagttaaatgaatgtcccttggat
cctggtggctacttcattattaatgggtcagaaaaggttctgattgctcaagagaaaatg
gcaacaaatacagtctatgtgtttgccaaaaaggattctaaatatgcctacacaggagag
tgtagatcatgtctggagaattcttctcgacccaccagcactatctgggttagcatgctg
gcgagaggaggacagggtgcaaaaaagagtgctattggtcaacgtattgtggcaacccta
ccgtatatcaagcaagaagttcccatcattattgtgtttagagcgttaggttttgtgtct
gacagagatattttagagcatattatttatgattttgaagatccagagatgatggaaatg
gttaaaccatcacttgatgaagcttttgtcatccaagaacagaatgttgcactaaatttc
attggttcaagaggggcaaagcctggtgttaccaaagagaaaaggattaaatatgccaag
gaagttttacagaaagaaatgctccctcatgttggtgtcagtgacttttgtgagacaaag
aaagcttatttcttggggtacatggttcataggttgctgctagcagctttgggtagaaga
gaattagatgacagagatcactatggaaacaaaagattggaccttgctggaccactactt
gcattcttatttagaggaatgtttaagaatttgcttaaagaagtacggatctatgcccag
aagttcattgatcgtggaaaagattttaacttggaattggcaattaaaacaaggattata
tctgatggcctaaaatattctttggctactggaaactggggtgatcaaaagaaagctcat
caagccagagctggagtatctcaggtattaaatcgcctgacttttgcatctactctttct
cacctgcgtcgtttaaattctcccatcggtagagatggcaagctagcaaaacccagacaa
ttgcataatacattatggggaatggtgtgtcctgctgagaccccagagggtcatgctgta
ggacttgtgaagaatttagccctgatggcttatatttcagttggatctcaaccttctcca
attctggaatttttagaagaatggagtatggaaaatttagaagaaatttctcctgcagct
attgctgatgcaaccaagatctttgttaatggctgttgggttggaatacataaagatcct
gaacaacttatgaacacactacggaagttgcggcgtcagatggacatcattgtgtctgaa
gtttctatgatcagagatattcgagagagggagattcggatctatacagatgcaggccgt
atttgtagaccacttctaattgtggaaaaacaaaagctgcttttgaagaagagacacatt
gatcaattgaaagagagagaatataacaattacagttggcaggatcttgtggccagtggg
gtggtagaatatattgatactcttgaagaagaaacagtgatgcttgcaatgaccccagat
gatttacaggagaaagaagtagcttattgttccacatatacacactgtgaaattcatcca
tcaatgattcttggtgtctgtgcctctattattccttttcctgatcataaccagtcccct
agaaacacataccagtctgctatgggtaagcaggctatgggggtttatatcaccaacttt
catgttcgtatggatacgttggcccatgttctgtattatcctcaaaaaccacttgtgact
acacggtctatggaatatctgcgatttagagagctgccagcaggtatcaactcaattgta
gccattgcatcgtacactggatataatcaggaagactctgttatcatgaatcgttcagct
gtagaccgaggctttttcaggtctgttttctatcgatcatacaaagaacaggaatctaaa
aaaggctttgatcaagaagaagtttttgagaaacctacacgtgaaacttgccagggtatg
agacatgctatttatgacaagctggatgatgatggtttgatagctcctggagtccgtgtc
tcaggtgatgacgttattataggcaaaacagtcaccttgcctgaaaatgaagatgaattg
gagggcactaacagacgctatacaaagagagactgcagcactttcctcaggaccagtgag
acgggcatcgtggatcaggtcatggtaacgctcaaccaagaaggatataagttttgtaaa
ataagggtacgctctgttagaattccacagattggagacaaatttgctagtcgacatggt
caaaagggtacttgtggtattcagtatagacaggaggatatgcctttcacctgtgaaggt
atcacccccgatatcatcataaatccccatgccatcccctctcgtatgaccattggtcac
ttgattgaatgtcttcaagggaaggtatcagctaacaagggtgaaattggtgatgccact
ccattcaatgatgctgttaatgtgcagaagatttctaatcttttatctgattatggctac
catctcagaggaaatgaggtcttatacaatggattcactggtcgaaaaatcacatcacag
atttttattggccccacttattaccagcgtttgaagcatatggtggatgataagattcat
tctcgtgctcggggacctattcagattcttaatagacaaccgatggagggtagatctcgt
gatggtggcttgcgttttggagaaatggaacgagactgtcagattgcccatggagcagcc
cagtttttaagggaaagattgtttgaggcatcagatccgtatcaggttcatgtttgcaat
ctttgtgggataatggcaattgctaacaccagaacccatacatatgaatgcaggggctgc
cgaaataaaacccagatctctttggttcgaatgccttatgcgtgcaaactgctgtttcag
gagctcatgtcgatgagcattgcacctcgaatgatgagtgtttag
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integrated database retrieval system
