Odocoileus virginianus (white-tailed deer): 110125635
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Entry
110125635 CDS
T10722
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03013
Nucleocytoplasmic transport
ovr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110125635 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110125635 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110125635 (NUP188)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110125635 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
HEAT_SCC3-SA
Gar1
DUF4912
Motif
Other DBs
NCBI-GeneID:
110125635
NCBI-ProteinID:
XP_020730400
UniProt:
A0A6J0W242
LinkDB
All DBs
Position
2:94640887..94683161
Genome browser
AA seq
1751 aa
AA seq
DB search
MAAAAGGPCVRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEGLSYYRPPSPSSAEK
VKASKDAASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQA
LLLKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVTKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRRELHQFAQDG
LICQDMDRLMLTFGDIPHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLNVFQYLTR
LLRSLASGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKH
KPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLLHTGFLPFVAHQVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQNQGLVPCVMFVLKEMLPSYHK
WRYNSHGVREQIGCLILELIHSILNLCHETDLHSSHTPSLQSLCICSLAYTEAGQTVINI
MGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQA
LTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDA
FLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGVWSCLH
AVLELISSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGT
LSPLSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFAYWSGYVK
ALAAHMADTEGSSCTSLVECQMLVSAWRMLLIIATSHAEITHLTDSAVRRQLFLDVLEGT
KALLLVPTSVNCLRLGSMMCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQADQQLME
KTKAKVFSAFITVLQMKEMRVNDIPQYSQLVLNVCETLQEEVIALFDQTRHSLAAGSATE
DKDSMETDDCSRLRHKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLFTTL
EVSLRVKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSSNGTVQT
PGASRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLNAVRTV
QSLACLEEADHTVGFLLQLSSFRKEWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQH
YLQNKNGEGIPSAVGPRAQRPPTAAPAAPSCSSSKQPAPDTEASEQRALRTVQYGLLRIL
SRTLAALRRFTPDVCQVLLDQSLDLAEYSFLFALSFTTPTFDSEGAPSFGTLLATVNVAL
NMLGELDKKKEPLTQAVGLSTQVEGTRTLKSLLMFTMENCFYLLISQAMRYLRDSAVHPR
DKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKSTSLSKVSPESQEPLIQ
LVQAFVRHVQR
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgccggcggtccgtgtgtgaggagcagtagagaactgtggacaattctg
ctaggaaggtcagctctgagagaactgaatcagattgaggcagagctgaataaacattgg
cagcggctgttagaaggactttcttactacagacctcccagtccaagttcagctgaaaaa
gtgaaagctagtaaagatgcagcttcaccactgaaggaactgggtttaagaatcagcaag
tttttgggtcttgatgaagaacagagtgtgcagttactccagtgttaccttcaggaggat
tacagaggtactcgggactcactaaagacggtgctgcaagatgagaggcagagccaggcc
ttacttctgaagattgcagattattactatgaggaaagaacctgtattcttcgttgtgtc
ttacaccttctcacttatttccaagatgaaagacacccttatagggttgaatatgccgac
tgtgtggataaattggaaaaggagctagttacaaaatatagacagcagtttgaagagctt
tataaaactgaagcaccaacatgggagactcatggaaacctcatgactgagcgccaggtg
tctcgctggtttgttcagtgccttcgggagcagtccatgctgctagaaattattttcctg
tattatgcatactttgagatggcgcctagtgacctattggtgttaaccaagatgtttaaa
gagcaaggatttggtagtaggcagactaacaggcacctggtagatgagaccatggatcct
tttgtggatcggattggatacttcagtgcccttatcctggtggaaggcatggatattgaa
tccttgcataagtgtgctttggatgacagaagagaactgcaccagtttgctcaggatgga
cttatttgtcaggatatggaccgtttgatgttgacctttggggacattccgcatcatgcc
ccagtgcttttggcatgggccctcctccgtcacaccctgaatccagaagagacaagcagt
gtggtccggaagataggggggacagctatccaactgaatgtctttcagtacttgacccga
ctgctccgctcgctggccagtggaggaaatgattgtaccaccagtactgcgtgcatgtgt
gtctatggactcctttcttttgtcctgacctccctggagctgcacaccctaggcaatcag
caggatgtaattgacacagcatgtgaagtcctggcagacccttctctcccagaactgttc
tggggaacagaaccaacctctggtcttgggattattctggacagtgtatgtgggatgttt
ccccatctcctttcccctctcttgcaattgcttcgagcccttgtatcagggaaatctact
gctaagaaggtgtatagtttcttggataagatgtctttctacaatgaactctataagcac
aagccccatgatgtgatctcccatgaagatggaactctttggcggaggcaaacacccaaa
ctcctttaccctctagggggtcagaccaaccttcgcatacctcaaggcactgtgggccaa
gtgatgctggacgacagggcctacctggtgcgctgggagtactcctacagcagctggacc
ctcttcacctgcgagattgaaatgctgctgcatgtcgtttccactgcagatgtgattcag
cattgccagcgggtcaaacccatcatcgaccttgtccataaagtcatcagtacagacctg
tcgatagcagactgcctcctgcccatcacgtcccgcatctacatgctgctgcaaaggtta
acgacagtgatctccccgcctgtggatgtcattgcttcttgtgtcaattgcttgaccgtt
ttggctgcccggaacccagcaaaggtctggactgatcttcttcacacaggcttcttgcct
ttcgtggctcaccaggtctccaacatgagtcagatgatcagtgctgaggggatgaatgct
ggtgggtatggaaacctcttgatgaatagtgaacagccccagggcgagtatggggtcact
attgcctttctgcgcttgatcaccactcttgtcaaggggcagcttggtagtacccagaac
caagggctggtgccttgtgtcatgtttgtgctgaaggagatgctgccaagttaccacaag
tggcgctacaactctcatggtgtgagagaacagattggttgcctgatcctggagctgatt
cattcaatactgaacctgtgccatgagacagacctgcacagcagtcacacccccagcctg
cagtctctctgcatctgcagcttggcctacacggaagcaggacagacagtgatcaatatc
atgggcatcggtgtggacaccatcgacatggtcatggctgctcagccccgcagtgatggg
gcagagggccagggccagggccagctgctgatcaagacagtgaaactggcattctccgtc
accaacaatgtcatccggctgaaaccgccttctaatgtggtgtcccctctagaacaggct
ctcacacagcatggtgcccatgggaacaaccttattgctgttcttgccaaatacatctac
cacaaacacgacccagctctgcctcgtcttgccatccagctgctaaaacgtctggccacg
gtggcccccatgtcagtgtatgcctgcctgggtagtgatgcagctgccatccgagacgcc
ttcctgacccgactgcagagcaagattgaggatatgcgcatcaaagtcatgattctggaa
ttccttacggttgcggtagagacgcagccaggcctcattgaactatttctgaatctggag
gtgaaggatggcagcgatggctccaaggaattcagcctcggggtgtggagctgtctccac
gcagtgctggagctgatcagttctcagcagcaggaccgctattggtgcccccccctgctg
caccgggcggccatcgcctttttgcacgccctgtggcaggaccggcgggacagtgccatg
ctggtcctcagaaccaaacccaagttttgggagaatctaacgagtccgctatttggtaca
ctttctcctctctcggaaacatctgagcccagcatcctggaaacctgtgccctaatcatg
aagataatttgcttggagatatactatgtagttaagggctcattagaccagtcattaaaa
gatacactcaagaaattttccagcgagaagcgctttgcctactggtcggggtacgtcaag
gccttggccgctcacatggccgacaccgagggcagcagctgcacctccctggtggagtgt
cagatgctggtctccgcctggaggatgcttctcatcatcgccaccagtcatgcggagata
acgcacctgacggactctgcagtgcgtcgccagctctttcttgacgtgctcgaggggacc
aaggcgttactccttgtccccacctccgtgaactgcctccgcctcggctccatgatgtgc
accctgctgcttattctcctccggcagtggaagagagagttagggtctgtggatgaaatt
ctcgggcccctgacggagatcttggagggagtgctgcaggcagaccagcagctcatggag
aagaccaaggccaaggtgttctcagcattcatcacggtgctgcagatgaaggaaatgaga
gtgaatgacatcccccagtactcccagctggtgctgaacgtctgcgagacccttcaagaa
gaagtgatcgcgctttttgaccagacccgccacagcctggcggcgggcagtgccaccgaa
gacaaggacagcatggagactgacgactgctcccggctccggcataaggaccagcgggac
ggggtctgtgtcctgggcctgcacctggccaaggagctgtgtgaggtggatgaggacggg
gactcgtggctgcaggtgacccgccggctccccatcctaccgaccctcttcaccaccctg
gaggtgagccttcgcgtgaagcagaacctgcacttcaccgaggcagcgctgcacctgctc
ctcaccctggcccgtacccagcagggggccacggccgtggctggagctggcatcacccag
agcatttgtttgcctctcctgagtgtgtaccagctcagcagcaacgggacagtgcagacg
cccggcgcttctcggaagtccctggacgccccctcttggcctggtgtctaccgtctctcc
atgtccttgatggagcggctcctcaaaaccctgcgctacaacttcctgactgaggccctg
gacttcgtgggggttcaccaggagcggaccttacagtgcctcaacgctgtgaggacggtg
cagagtctggcgtgcctggaggaggcggaccacactgtgggcttcctcctgcagctctcc
agcttcaggaaggagtggcacttccacctgcctcagctcatgcgggatgtccaggtgaac
ctcggctacctgtgccaggcctgcacctccctcctgcacagccgcaagatgctgcagcac
tacctgcagaacaaaaatggggagggcatcccctcggccgtcggcccccgagctcagcgg
ccgcccacagctgccccggctgccccctcctgctcctcctccaagcagcccgctcctgac
acagaggcctcggagcagcgggccttgcgcaccgtccagtacggcctcctgaggatcctc
agcaggaccctggctgccctgcgccgcttcacccccgatgtctgccaggtcctgctggat
cagtccctggaccttgctgaatacagcttcctgtttgccctgagcttcaccactcccacc
tttgactctgaaggggccccctccttcgggacccttctggccaccgtgaatgtggccctg
aacatgcttggagagttggacaagaaaaaggagcctctcacccaggctgtggggctcagc
acacaagtggaagggaccagaactctgaagtcgctcctgatgttcaccatggagaactgc
ttctacctgctcatctcccaggcgatgcgttaccttcgggattcggctgtgcacccccgg
gacaagcagcggatgaagcaggagctcagctcagagttgagcactctcctctccagcctc
tcccgctacttccgccggggagcccccagctcccctgctgctggcgtccttccctcaccg
cagggcaagtccacctctctctccaaggtcagccccgagagtcaggagcctctgatccag
ctggtgcaggcctttgtccgacatgtgcaaagatag
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integrated database retrieval system
