Odocoileus virginianus (white-tailed deer): 110131684
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Entry
110131684 CDS
T10722
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03013
Nucleocytoplasmic transport
ovr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110131684 (UPF1)
03015 mRNA surveillance pathway
110131684 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110131684 (UPF1)
Enzymes [BR:
ovr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110131684 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110131684 (UPF1)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110131684 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110131684 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110131684
NCBI-ProteinID:
XP_020740136
UniProt:
A0A6J0WTZ4
LinkDB
All DBs
Position
3:complement(3811533..3845340)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
GAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcttggacaccgaggag
gccgagctgctcggcgctgacacccagggctccgagttcgagtttaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgcgggggccccggtc
ggagccggcccgggcgcggcggccggacagctcgacgcgcaggtcggtgggcctgagggc
atcctgcagaatggggccgtggatgacagcgtggccaagaccagccagttgttggccgag
ttgaactttgaagaagatgaagaagatacctattacacaaaggatctccctgtacatgcc
tgcagttactgtggaatacacgatcctgcttgcgtggtttactgtaacaccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcaccttgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctaggggagacggtcctggag
tgttacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctgtgccggcagccctgtgccagtcagagcagcctcaaggacatc
aactgggacagctcccagtggcagcccctgatccaggaccggtgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcactgcccagcagatc
aacaagctggaggagctctggaaggagaacccgtcggccaccttggaggacttggagaag
cctggagtggacgaggagccgcagcacgtcctcctgcggtacgaggacgcctaccagtac
cagaacatattcgggccgctggtcaagctggaggctgactacgacaagaagctgaaggag
tcacagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagatatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggca
cccctctggaaagggatcggccatgtcatcaaggtccctgataattatggcgatgagatt
gctattgagctccggagcagtgtgggtgcccctgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacagaatgcagagtgcgctgaaaaccttcgct
gtggacgagacctctgtgtcgggctacatctaccacaagctgctcggccatgaggtggag
gatgtgatcatcaagtgccagttgcccaagcgcttcacggcacaggggctccccgacctc
aaccactctcaggtttacgccgtgaagactgtgcttcagagaccgctgagtctgatccag
ggcccgccgggcacggggaagaccgtgacctcagccaccatcgtctaccacctggcccgg
caaggcaacgggcccgtgctcgtctgtgctccgagcaacatagctgtggaccagctgacc
gagaagatccaccagactgggctgaaagtcgtgcggctctgcgccaagagccgcgaggcc
atagactccccagtgtccttcttggccctgcacaaccagatcaggaacatggacagcatg
cccgagctccagaagctgcagcagctgaaggatgagaccggggagctgtcatcggcagac
gagaagcgttacagagccctgaagcgcactgctgagagggagctgctcatgaacgcagat
gtcatctgctgcacgtgtgtgggcgcaggagatccgaggctcgccaagatgcagttccgc
tccattctaatcgacgagagcacgcaggccaccgagccagagtgcatggtccctgtagtc
cttggggccaagcagctgatcctcgtgggtgaccactgccagctgggtcccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcgcagtcgctctttgagcgcctggtggtgctg
ggcatccgccccattcgcctccaagtccagtaccggatgcaccccgcactcagcgccttc
ccatccaacatcttctacgagggctctctccagaacggcgttactgcagcggatcgtgtg
aaaaaggggtttgactttcagtggccccaaccggataaaccgatgttcttctatgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctgaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgctgaaggcgggcgccaagccggaccagatcggc
atcatcacgccctacgagggccagcgctcctacttggtgcagtacatgcagttcagcggc
tctctgcacaccaagctctaccaggaggtggagattgccagtgtggacgcgttccagggg
cgtgagaaggactttatcatcctctcctgtgtgcgggccaatgagcaccaaggcattgga
tttttgaatgaccccaggcgacttaacgtggccttgaccagagcacgatacggggtcatt
atcgtgggcaacccgaaggccctgtccaagcagccgctgtggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggcccctgaacaaccttcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccaggagcccgcttcatgacg
acagccatgtatgatgcccgggaggccatcatcccggggtcggtctatgaccggagcagc
cagggccggccctcgaacatgtatttccagacccacgaccagattggcatgatcagtgcc
ggccccagccacgtggctgccatgaacattcccattcccttcaacctggtcatgccgccc
atgccaccaccggggtattttggacaagctaacgggccagccgcaggccgaggcacccca
aaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagt
cagacgaatctccccaacagccaggccagccaggatgtggcgtcccagcccttctcccag
ggcgccctgacccaaggctacatctccatgagccagccctcccagatgagccagcccggc
ctgtcccagccagagctgtcccaggacagctaccttggagatgagtttaagtcacagatc
gatgtggcgctgtcgcaagactccacataccagggggagcgggcgtaccagcacggtgga
gtgacggggctgtcccagtactag
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