Odocoileus virginianus (white-tailed deer): 110134414
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Entry
110134414 CDS
T10722
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr01524
Platinum drug resistance
ovr03430
Mismatch repair
ovr05200
Pathways in cancer
ovr05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110134414 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110134414 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
110134414 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
110134414 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ovr03400
]
110134414 (MSH2)
DNA repair and recombination proteins [BR:
ovr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110134414 (MSH2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
110134414
NCBI-ProteinID:
XP_070334068
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All DBs
Position
2:28455912..28532549
Genome browser
AA seq
934 aa
AA seq
DB search
MAVQPKDTLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKT
QGVVKYMGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGNNDVSASIGVVGVKMSTVDGQRQVGVGYVDSTQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVMPGGETAGDVGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLA
QLDAVVSFAHVSNAAPVPYVRPVILEKGRGRITLKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQECDGLEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EESITRKLKQLKAEVIAKNNSFVNEIISRIKVTA
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagccgaaggacacgctgcagctggagagcgcggccgaggtcggctttgtg
cgcttcttccaaggcatgccggagaagccgaccaccaccgtgcgcctttttgaccggggt
gacttctacaccgcgcaccgggaggacgcgctgctggccgcccgcgaagtgttcaagacc
cagggggtggtcaagtacatggggccggcaggagcaaagactctggagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaaataaggcctccaaggagaatgattggtatttggca
tttaaggcctctccaggtaatctttctcagtttgaagatattctctttggtaacaacgat
gtgtccgcttccattggtgttgtgggtgttaaaatgtctacagtcgatggtcaaagacag
gtcggagttgggtatgttgactccacacagaggaagctaggactgtgtgagttccccgat
aatgatcagttctccaatctggaggctctcctgattcagattggaccaaaggagtgtgtt
atgccaggaggggagactgctggagacgtgggaaaactgaggcaggttattcagagagga
ggaattttgatcacagaaagaaaaagagctgacttttccacaaaagatatttatcaggac
ctcaaccggttgttgaaaggcaaaaagggagaacaaatgaatagtgctgtgttgccagaa
atggagaaccaggttgcagtttcatccttgtctgcagtaatcaaatttttagaactctta
tcagatgactcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtgagagcccttaaccttttccagggttctgttgaagatact
tctggctctcagtctctggctgcattgctgaataaatgcaaaacccctcaaggacaaaga
ctggttaaccagtggattaagcagcctcttatggacaagaacagaatagaagagagatta
aatttggtagaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcagcaaat
ttacaagattgttaccgactctatcagggtataaatcaactccctaatgttattcaggct
ttggaaaaatatgaaggaaaacatcaggcattgttgctggcagtttttgtgactcctctt
attgaccttcgttctgacttctccaagtttcaggaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgagttccttgtaaaaccttcatttgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattagtaagtgcagcc
agagatctaggcttagatcctggcaaacagattaaactggattccagcacacagtttggc
tattatttccgagtaacgtgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
actgtagatatccagaagaatggtgttaaatttacaaacagtaaactgacttctctcaat
gaagagtataccaaaaataaaactgaatatgaggaagcccagaatgccattgttaaagaa
attgtcaatatttcttcaggctatgtagaaccgatgcagactctcaacgatgtgttagct
cagctggatgctgttgtcagctttgctcatgtgtccaatgcagcacctgttccatatgta
cggccagtcattttggaaaaaggtcgagggagaattacactgaaagcatccagacatgct
tgtgttgaagttcaagatgaagtcgcatttattcctaatgatgttcactttgaaaaagat
aaacagatgttccacatcattactggtcccaatatgggagggaaatcaacatatattcgc
cagactggggtggtagttctcatggcccagattgggtgtttcgtgccgtgtgagtgggca
gaagtgtccattgtagactgcatcttggcccgcgtaggggctggcgacagtcagttgaaa
ggagtctccacgtttatggctgaaatgttagaaactgcttctatcctcaggtctgcaacc
aaagattccttaataatcatagatgaattgggaagaggaacctctacctatgatggattt
ggattagcgtgggctatatcagagtacattgcaacaaagatcggtgctttttgcatgttt
gcaacccattttcatgaacttacagccttggccaatcagataccaactgttaataatcta
catgtcacagcactaactactgaagagactttaactatgctttatcaggtgaagaaaggt
gtctgtgatcaaagttttgggattcatgttgctgagcttgctaatttccccaggcatgtg
atagagtgtgctaaacagaaagccctggagttggaggagtttcagaatattgggaaacca
caggaatgtgatggactggaaccagcagcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaagagtttctatccaaggtaaagcaagtgccctttactgaaatgtca
gaagaaagcatcacaagaaagttaaaacagctaaaagctgaggtgatcgcaaagaataat
agttttgtaaatgaaatcatttcccgaataaaggtaactgcgtga
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