Odocoileus virginianus (white-tailed deer): 110134472
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Entry
110134472 CDS
T10722
Symbol
TNRC6C
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110134472 (TNRC6C)
Chromosome and associated proteins [BR:
ovr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110134472 (TNRC6C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
110134472
NCBI-ProteinID:
XP_070335972
LinkDB
All DBs
Position
17:complement(51231671..51346894)
Genome browser
AA seq
1937 aa
AA seq
DB search
MEEKKKKKQEEKKKKEGAQKKAADQKTKVPEPTKTCSSQPQPAGTSTSTSTSTLSSGSNG
KRASAGGQQPAAARYLPREVPPRFRQQEQKQLLKRGQPLPAGALSGVSPTQGAGPAGLSP
PPLPGAGAQPHPSKPQPDLGHSGPAEHYESSPWGQQPPYRSEAGCSWEKGVSDRTDAGAW
PSLPGAETESASECTTDTDSASNCGSENSSMATGSAQGSFTGQTKKTNGNNGSNGALVQN
PSAQSALGAGGASGNGGAARVWGVAAGAGSGLAHCSLGGGDGKMDNMIGDGRSQNCWGAS
NSSAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNMGTQNGNPAGTLGA
WGNLLPQESTEPQTSTSQNVSFSVQPQNLNTDGPNNTNPLNPSPSPLNAVQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQVGGGGSEGISSSVWGLSPGNPATGNSGSGFSQGNG
DTVNSALSAKQNGSSSAVQKEGNGGNNAWDSGPPAGPGILAWGRGGGSSGVGNLHSGAWG
HPSRSTSNGVNGDWGKPPNQHSSSDINGKGSTGWDSPSAGGQNPAAQPGSEHVNSWAKAA
SSGTSASEGSSEGSGSHNEGSTGRDGAEGRRRDKGILEQGHLQLPRSDLDPRVLSNTGWG
QTPVKQNTAWEFEESPRSERKNDNGTEAWGCAATQPSHSGGKNDGSSVNSTNTSSVSGWV
SSPPAAAPAHASWGDSSHKAPSGPGVWGEAISSTAVNNAAAAKSGHAWSGTVNQEDKSAT
WAEPQKPRSQNWGDGHKPNPAWSAGGGDWADSPSVLGHLGEGKKNASGWDADGSRSGSGW
SEAPRSGTGGWGNGTNAKVNPGTSWGESLKPGPQQNWASKPPDSSSSNWGGAASVKQTGT
GWIGGPVPVKVKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSNYNNKTVNMWDRNNP
GIQSSAPAGAAAATTSDSATVAEAPPAHQTGAQLSRSPLLGPVSSGWGEMPNVHSKAENS
WGESSSPSTLVDNGTAAWGKPPSSGSGWGDQPTEPALTFGRASAPAAAPALCKPASKSMQ
EGWGSGGDDANLGASQWEDEDGGVWNNAASQESPSSCSSWGNAPKKGLQKGMKTPGKQDE
AWIMTRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDYNGMV
TKPLGCRPPISKESSVDRPTFLDKLTLSFPNQDGGLVEEPTTSPFLPSPSLKLPLSNSAL
PNQALGGIASGLGMQNLNSSRQTPSGNLGMFGSSGAAPARTMQQPPQPPVPPLSSSQPSL
RAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQ
QMLQAQRNVSGPMRQQEQQVARTITHLQQQIQQHQRQLAQALLVKPPPPPPLSLHPSAGK
SALDSFPPHPQAPGLPELQTKEQQSSPSTFAPYPLAGLNPNMNVSSMDMPGGLSVKDPSQ
SQSRLPQWTHPNPMDNLPGAASPLDQNPSKHGAIPGGLSIGPPAKSSIDDSYGRYDLIQS
SESPASPPVAVPHSWSRAKSDSDKISNGSSINWPPEFHPGVPWKGLQNIDPENDPDVTPG
SVPTGPTINTTIQDVNRYLLKSGGSSPPSSQNATLPSSSAWPLAASGYSRSFSSLAPAPS
VAGKLSDIKSTWSSGSASHTQASLSHELWKVPRNTTAPTRPPPGLTNPKPSSAWGASPLG
WTSSYSSGSAWSTDASGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAV
VRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQPSPGTSQ
TRLGASGSAHGLVRSDAGHWNAPGLAGKGGSDLLWGGVPQYSSSLWGPPSSDDGRVIGSP
TPLNTLLPGDLLSGESI
NT seq
5814 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaggaagaaaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacctaccaagacctgttcaagccagccc
caacctgccggcaccagtaccagtacttccaccagcaccctctccagcggcagcaatggc
aaacgtgcatctgccggcggccagcagccagctgcagcccgttacctgcctcgcgaggtg
cctccacgcttccgccagcaagaacagaagcagctgttaaagagaggtcagccactgccc
gcgggggccctgagcggcgtgagtcccacgcagggcgctgggcctgcaggcctgagccca
cccccgctgcctggagccggagcacagccgcaccccagtaagccccaaccagacctcggt
cacagcggcccagcggagcattatgagagttccccctggggacagcagcccccttaccgg
agcgaagccggctgcagctgggagaagggagtaagcgacaggacggacgcgggggcctgg
ccctccctcccgggagcagagacggaatccgcctcagaatgtaccacagacactgactct
gcctccaactgtggctcagagaacagtagcatggctacggggagcgcccagggcagcttc
actggacagaccaagaagacaaatggcaataatggctccaacggcgcgctggtccagaac
ccgtccgctcagagtgccctcggggcggggggagcgagcggtaacggaggtgccgccaga
gtgtggggcgtagccgcgggcgccggctcgggcctggctcactgctccctcggcggcggg
gatgggaaaatggacaacatgatcggagatgggaggagtcagaactgctggggtgcctcc
aactccagcgctggcattaatcttaaccttaatcccaacgccaacccagctgcctggcct
gtactcggacatgaaggaactgtggcgacaggcaacccttccagtatttgcagtccggtc
agtgccataggtcagaacatgggcacccagaatgggaacccagcgggcactttaggtgct
tggggaaacttgctgccgcaagagagcacagaaccacaaacgtccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccctg
aacccttcccccagccctctcaacgcagtgcagacgaacggactgccgaactggggcatg
gctgtcggcatgggggccatcatcccgccccacctgcaaggccttcctggtgctaacgga
tcgtcagtttctcaagtcggtgggggtggcagcgaaggaatcagcagttctgtgtgggga
ctgtccccaggtaatccggccacaggaaacagcggttccgggttcagtcaggggaatggc
gacactgtgaactcagcattaagtgctaagcagaacggctccagcagcgctgtgcagaag
gaggggaacggagggaacaacgcctgggactcaggacctcctgcgggtcctggcatcctc
gcctgggggcggggcgggggcagcagcggcgtgggcaacctccactcgggagcttggggt
caccccagccggagcacctccaacggggtgaacggggactgggggaagccccccaaccag
cattccagtagcgacatcaacgggaaaggatcaacagggtgggacagtcctagcgccggt
ggccagaatcctgccgcgcagcctggtagcgagcacgtgaactcttgggccaaagctgcg
tcctctggaacgtcggccagtgaaggcagcagcgagggttctggcagccacaacgaagga
agcactgggcgggatggagcagaaggccgacggcgagacaaagggattctcgagcaaggg
cacctccagttgccaaggagcgaccttgacccacgagttctgtccaacactggttgggga
cagactccagtgaagcaaaacactgcctgggaatttgaagagtcccccaggtccgagcgc
aagaacgacaatgggacagaggcctgggggtgtgcagctactcagccttcacactcaggg
gggaagaacgatgggtccagcgtgaacagtacaaatacctcttcagtatcggggtgggtc
agctcaccgcctgctgctgcgccagcgcacgccagctggggagacagcagccacaaagcg
ccaagcggccccggggtttggggggaggcgataagctctactgctgttaataatgctgct
gctgccaagagtggccacgcttggagcgggaccgtaaatcaggaggacaagtccgccacc
tgggctgagcctcagaaacccaggtctcagaactggggagacggacacaagccgaaccca
gcctggagcgcaggcgggggagactgggcagattcgccctcggtcctcggacacctgggg
gaggggaagaagaacgcctcgggctgggatgctgacggtagtcgatcagggtctgggtgg
agcgaggctccgaggtcggggaccggtggctggggcaatggcacaaacgcgaaggtgaat
ccagggacaagctggggagagtctctgaagcccggcccccaacagaactgggcgagcaaa
cccccagacagcagctcgagtaactggggaggagccgcttccgtgaaacagacaggaaca
gggtggatcggggggccggtgcccgtcaaagtgaaggacagcagcgaggccacgggctgg
gaggagccttccccgccatccatccgccgcaaaatggaaatcgatgacggtacctcagct
tggggcgacccgagcaactacaacaataaaactgtaaacatgtgggacagaaacaaccca
ggcatccagagcagcgccccggccggcgccgccgccgccaccacaagcgacagcgcaacc
gtggccgaggcgcccccggcacaccagaccggcgcccagctgagccgatcgccgctgctc
ggcccagtttcgtcgggctggggagaaatgcctaacgttcattcgaaggctgaaaactct
tggggggagtcatcatccccatccaccctggttgataatggcacagcagcgtggggtaag
ccacccagcagcggcagcggatggggggaccagcccaccgagccggcgctgacgttcggg
agggccagcgcccccgctgccgccccagccctgtgcaaaccagcttcaaaatctatgcaa
gaaggctggggcagcggtggggacgacgcgaacctcggcgctagtcagtgggaggacgag
gatgggggcgtgtggaacaacgcggcttcgcaggagagcccctcttcctgcagctcctgg
gggaacgcccccaagaaagggctccagaagggcatgaaaacacctggcaagcaggacgag
gcctggatcatgacgcggctgatcaaacaactcacagacatgggcttcccgagagagccg
gctgaagaggccttgaagagcaacaacatgaatctcgatcaggccatgagcgctctgctg
gaaaagaaggtggacgtggacaagcgtggactgggagtgaccgactacaacgggatggtc
accaagccccttggctgccgcccaccaatctccaaagagtcttccgtggaccgccccacc
ttccttgacaagctcacgctttctttccccaatcaggatggcggcctcgtggaagagccc
acgacttcaccatttttgccttcaccaagcctgaagctccccctttccaacagtgcactc
cccaatcaggccctgggcgggattgcctcagggctgggcatgcaaaacttgaattcttct
agacagacaccgagtggcaatctgggcatgtttggcagcagcggagcagcgcccgccagg
accatgcagcagccgccgcagccgcccgtgccgcccctgagctcctcccagcccagtctc
cgtgctcaagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgca
gcaaaaaacattggtctcaaccctgcactattaacctcgccaattaatcctcagcatatg
acgatgttgaaccagctctatcagctgcagctggcataccaacgtttacagatccagcag
cagatgctacaggcccagcggaacgtttccggacccatgagacaacaggagcagcaagtt
gcgcgcacaatcactcacctgcagcagcagatccagcagcaccagcgccagctggcccag
gccctgctcgtgaagccgccgcccccgccaccgctgtctctgcacccctctgcaggcaaa
tcggccctggacagcttcccgccccacccccaggcccccgggctccccgagctgcagacc
aaagagcagcagtcctcacccagcaccttcgccccctaccctctcgccggactgaaccca
aacatgaatgtcagcagcatggacatgcctggtggtttgtcagtgaaggacccgtctcag
tcccagtcacgcctccctcaatggactcaccccaacccaatggataacttacccggtgct
gcttctccgctcgaccagaatcccagcaagcatggtgctatccctggaggtctgagcatc
ggacctccagccaagtcctccatcgacgactcctacggccggtacgatttaatccagagc
agcgagtcaccagccagccctcctgtagctgttccccatagctggtcacgtgccaaatct
gacagtgataaaatctcaaatggctccagcatcaactggcccccagaattccatcctgga
gttccctggaaaggacttcagaacatagatccggagaatgaccccgacgtcactcctgga
agtgtccccaccgggcccaccatcaacaccaccatacaggatgtcaaccgctacctcctc
aagagtggagggtcctccccaccatcatctcagaatgccacgctgccttcctcgagtgcc
tggccgctcgctgcctccggctacagtcgctctttcagcagccttgcgcccgctcctagt
gttgcaggtaagctgtcagacatcaaatcgacgtggtcctctggctctgcctcccacacg
caagcctccctgtctcacgaactgtggaaggtgcccagaaacactactgcacccacaagg
cccccgccagggctaaccaaccccaagccttcctccgcctggggagccagtcccctcggc
tggaccagctcttactcctcgggttccgcctggagtaccgacgcctcaggaaggacaagc
agctggctcgttctccgcaacctcacaccccagatcgacggctccaccctgcggacgctg
tgcctgcagcacgggcccctcatcacattccacctgaacctgacgcagggcaatgccgtg
gtccgctacagctccaaggaggaagccgccaaggcccagaagtccctgcacatgtgtgtt
ctgggaaacactaccatcttggccgagttcgccggcgaagaagaagtgaaccgtttctta
gcccaagggcaagcactgccacccacctccagctggcagcccagcccggggaccagccag
acgcggctgggcgcctcgggcagcgcccacggcctggtgcggagcgacgccggccactgg
aacgccccgggcctggccggcaaagggggcagcgacctgctgtggggcggggtcccccag
tactcgagcagcctatggggcccccccagcagcgacgacggcagggtcatcggaagcccc
accccgctgaacacgctgctccctggcgaccttctcagcggggagtccatctag
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