Odocoileus virginianus (white-tailed deer): 110134624
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Entry
110134624 CDS
T10722
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04151
PI3K-Akt signaling pathway
ovr04510
Focal adhesion
ovr04512
ECM-receptor interaction
ovr04974
Protein digestion and absorption
ovr05165
Human papillomavirus infection
Brite
Glycosaminoglycan binding proteins [BR:
ovr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110134624 (COL2A1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
110134624
NCBI-ProteinID:
XP_020744904
UniProt:
A0A6J0X9I2
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All DBs
Position
24:29794713..29825144
Genome browser
AA seq
1487 aa
AA seq
DB search
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGQPGPKGQKGEPGDIKDIIGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGPRG
LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAAGAPGAPGPPGSPGPAG
PVGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDDCTK
HTGKWGKTTIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcataggacccaaggga
cctcctggacctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggtcctcccggcccccccggcccccctggccttggtggaaactttgct
gcgcagatggctggtgggtttgacgagaaggctggtggcgcccagatgggagtcatgcaa
ggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggggaacccggtgtttctggtcccatgggt
ccccgtggtcctcctggcccccctgggaaacctggtgatgatggtgaagctggaaagcct
ggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccgggtgtgaagggcgagagtggttccccaggtgagaacggttctcca
ggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgctggcgct
gcaggtgctcgaggcaatgacggtcaaccgggccctgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccccggcgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcccgaaggcgctcaaggtcctcgcggtgaaccgggtactcctgggtcc
cctgggccagctggcgccgctggcaaccctggaactgatggaatccctggagccaaagga
tctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtccaccc
ggccctcaaggtgcaactggtcccctgggcccaaaaggtcaaacgggtgaacctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccccggtcctgctggtgaagaagggaaaagaggtgcccgtggagagcctggtggtgct
gggcccgccggtccccctggagaaagaggcgctcctggcaaccgtggtttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggccttgctggt
cccaaaggagccaacggtgaccctggccgtcctggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagcc
cctggtgaagatggtcgccctggacccccaggtcctcagggagctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgccaatggtgagcctggcaaagctggtgagaaa
ggactacccggtgctcctggcctgagaggtcttcctggcaaagacggtgagacaggtgct
gcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcctggccccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaagctggagctcccggcctcgtgggtcccaggggtgaa
cgaggtttcccaggagaacgtggctcccccggttcccagggcctccaggggccccgcggc
ctccccggcactcctggcaccgatggtcccaaaggcgcagctggcccagccggcccccct
ggggctcagggccctccaggtctgcagggcatgcccggtgagaggggagcagctggtatc
gctggacccaagggagacaggggtgatgttggcgagaaaggccccgagggcgcccccggg
aaggacggtggacgaggtctgactggccccatcggcccccctggcccagctggtgccaac
ggtgagaagggagaagttggaccccctggtcctgcaggaactgctggtgctcgaggtgcc
ccgggtgaacgtggagagaccggcccccctggacccgctggattcgccggtccccctggt
gctgatggccagcctggtgccaaaggtgaacaaggagaagctggccagaaaggtgatgct
ggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggccccccgggagccactggattccccgga
gcagctggccgcgttggacccccaggttccaatggcaaccctggaccccccggtcctcct
ggtccttctggaaaagatggtcctaaaggtgctcgaggagacagtggtccccctggccga
gctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gatgatggtccttctggtcccgacggtcctccaggtcctcagggtctggctggtcagagg
ggcatcgttggtctgcctggacagcgtggtgagcgaggattccccggtctccccggcccc
tcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccctggc
cctgtgggtcctcctggcctgactggtcctgctggcgagcctggacgtgagggaagcccc
ggtgctgatggcccccctggcagagatggcgcggctggagtcaagggtgaccgtggggag
accggcgctgcgggtgcccctggagctcccgggccccctggctctcctggccccgccggc
ccggttggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacccgca
ggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaagggagaa
actggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcctggcccccctggtccttctggagaccagggtgcttccggtcctgcaggtccttct
ggccccagaggtcctcctggccctgtcggtccctctggcaaagatggtgctaacggaatc
cctggccccattggacctcctgggccccgtggacgttccggcgagactggccctgctggt
cctcctggaaaccctggaccccctggccctcctggcccccccggccctggcattgacatg
tctgcctttgctggcctcggccagagagagaagggccccgaccccttgcagtacatgcgg
gccgatgaggcagccggcaacctgagacagcatgatgccgaggtggacgccacactcaag
tccctcaacaaccagatcgagagcctccgcagccccgagggctcccgcaagaatccagct
cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatc
gaccccaaccagggctgcaccctggacgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagccagcgttcccaagaagaattggtggagcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccatttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctccgcctg
ctgtccactgagggctcccagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagctgctggcaacctcaagaaggctctgctcatccagggctccaacgacgtggag
atccgggctgagggcaacagcaggttcacatacaccgttctgaaggatgactgcacgaaa
cacaccggtaagtggggcaagactacgatcgagtaccggtcacagaagacctcacgtctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa
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