Odocoileus virginianus (white-tailed deer): 110135042
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Entry
110135042 CDS
T10722
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr05016
Huntington disease
ovr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
110135042 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
110135042 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110135042 (HTT)
04131 Membrane trafficking [BR:
ovr04131
]
110135042 (HTT)
03029 Mitochondrial biogenesis [BR:
ovr03029
]
110135042 (HTT)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110135042 (HTT)
Membrane trafficking [BR:
ovr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
110135042 (HTT)
Mitochondrial biogenesis [BR:
ovr03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
110135042 (HTT)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_N-HEAT_1
HEAT
HEAT_GCN1
HEAT_2
HEAT_EZ
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
110135042
NCBI-ProteinID:
XP_070318531
UniProt:
A0ABM4HSI2
LinkDB
All DBs
Position
Unknown
AA seq
1817 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQPAPPPQPPQPPQPPPQAQPSPQPPPPPPPPPPPP
LGPAAAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLC
SDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAH
LVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAF
IANLKSSSPTVRRTAAGSAVSICQHSRRTQYFYSWLLSVLLGLLVPVEGEHPTLLILGVL
LTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLHYTQHQDHNVVTG
ALELLQQLLRTPPPELLRILTTAGGVRQLAAAKDEPGGRSRSGSIVELIAGGGSSCSPVL
SRKQKGKVLFGEAAPLEDGSESRSEGSSPAFSASVKGEVGGELAASSGVSTPGSTSSAAD
SVGHDIITEQPRSQHTLQTDSVDLAACDLASTATDGDEEDILSHSSSQMSAVPSDPAMDL
NDGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDSQYPGMQVGPMQDEDEDAAAV
LPDEDTEAFRNSSIALQQAHLLESVGHGRQASGSSVGTFVSREEAAEPGDPESKPCRIKG
DIGQSTDEDSAPLVHCVRLLSASFLLTGERNALVPDRDVRVSVKALALSCVGAAVALHPE
SFFGKLYRAPLDTMEYPEEQYVSDVLNYIEHGDPQVRGATAILCGTLICSVLRRCRFHVA
AWMGAVRARTGNAFSLADCIPLLQKALKDESSVTCKLACAAVRLCVVSLCSSSYSAWGLQ
LITDLLALRSSAYWLVRTELLETVAEIDFRLVSFLEAKAETLHRGAHHYTGLLKLQERVL
NNVVIYLLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADPVVAVARDQSSVYLTLLMHE
TQPPSHFSVSTVTRIYRGYNLLPSITDVTLENNLSRVIAAVSHELITSTTRALTFGCCEA
LCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMVTMILTLLSSAWFPLDLSAHQD
ALILAGNLLAASAPRSLRSSWTSEDEASTAATKQEEVWPALGDRTLVPMVEQLFSHLLKV
INICAHVLDEVAPGPAVKAALPSLTNPPSLSPIRRKGKEKEPVEQASVPVSPKKGGEASP
ASRPPETSGPVAANKSSSLGSFCHLPSYLKLHDVLKATHANYKVTLDLQSSSEKFGGFLR
SALDVLSQILELATLQDIGKCVEEILGYLKSCFNREPMMATVCVQQLLKTLFGTNLASQS
DSLSSHPSKSQGRAQRLGSSSARPGLYHYCFMAPYTHFTQALADASLRNVVQAEQDQDTS
GWFDVLQKVSSQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQV
LDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYER
YHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQK
EVVVSMLLRLIQYHQVLEMFTLVLRQCHKESEDKWKRLSRQVADVILPMLAKQQMHIDSH
EALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTLGSVSAVQLWVSGILAILRVLISQST
EDIVLSRIQELSFSPHLVSCPTISRLRDGDSTSALEEHSEGRQTKNLPEETFARYAPRLV
CGLGLSCGVESARSGPESDPLKIAQSSGWVRCLQRIGKRRKTHFCSSPLCTVIRAPQAVG
SRSLPVDRSAVLTSLYC
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtccctcaaatccttccagcagcag
cagcagcagcagcagcagcctgcgccgccgcctcagccgcctcagccccctcagccgccg
ccgcaggcgcagccgtcgcctcagccgcctccgccgccgccgccgccgccgccgccgccg
cttggcccagccgcggccgaggagccactgcaccgaccaaagaaagaactctcagccacc
aagaaagaccgtgtgaatcattgtctgacaatatgtgaaaacatagtggcacagtctctc
agaaattctccagaatttcagaaacttctgggcatcgctatggaactttttctgctgtgc
agtgatgatgcggagtcagatgtcaggatggtggctgacgaatgcctcaacaaagtcata
aaagctttgatggattccaatcttccaaggttgcagctagaactctataaggaaattaaa
aagaacggcgcccctcggagcctgcgcgctgccctgtggaggtttgccgagctggctcac
ctggtccggcctcagaagtgcaggccgtacttggtgaacctgttgccttgcctgacgcgc
acgagcaagagacccgaggaatctgttcaggagacgttggctgcagcgatccctaaaatt
atggcttcttttggcaactttgcgaacgacaatgagattaaggttctgttgaaggcgttc
atcgcgaacctgaagtccagctccccgaccgtgcggcggacggcggcgggctcggcggtc
agcatctgccagcactccaggaggacgcagtacttctacagctggctgctcagcgtgctc
ctaggtttgctggtccccgtggagggggagcaccccaccctcctgattctcggcgtcctg
ctcacgctgagatacttggtgcccctgctgcagcagcaggtcaaggacacgagcctgaaa
ggcagcttcggggtgacgcggaaagagatggaggtctctccctcgacggagcagctcgtc
caggtgtacgagctgactttgcactacacccaacaccaggaccacaacgttgtgactggg
gccttggaactgctgcagcagctcctccgaaccccgccgcccgagctcctgcgcatcctg
accacggcgggcggcgtccggcagctcgctgccgccaaggatgagcccgggggccgcagt
cggagcgggagcatcgtggagctgatagctggagggggttcttcatgcagccctgtcctt
tcaagaaaacaaaaagggaaagtgctcttcggagaagcggcacccctggaggacggctca
gagtccaggtcggagggcagcagccccgccttctcagcctcagtcaagggtgaggtcgga
ggtgagctggctgcctcttccggggtctccacccccggctccaccagctcagcggccgac
tctgtgggtcacgacattatcaccgagcagccccggtcgcagcacacgcttcagacggac
tcggtggatctggctgcctgtgacttggcgagcaccgccaccgacggggacgaggaggac
atcctgagccacagctccagccagatgagcgctgtcccttccgaccccgccatggacctg
aacgatgggacccaggcctcctcgcccatcagcgacagctcccagaccaccaccgagggg
cccgattcagccgtgaccccttccgacagttctgaaattgtgttagatggcaccgacagc
cagtacccagggatgcaggtggggccgatgcaggacgaggatgaggacgctgctgccgtt
cttcctgacgaagacacggaggctttcagaaactcttccatcgcccttcaacaagcacat
ttgttggagagcgtgggccacggcaggcaggcctctggcagcagtgtgggtacattcgtc
tcacgagaggaagctgccgaaccaggggatccggagagcaagccctgccggatcaaaggc
gacattggccagtccactgatgaggactccgcccctcttgtccactgtgtccgccttctg
tctgcttcatttttactcacaggggaaagaaacgccttggttccggacagggacgtgcgg
gtcagcgtgaaggccctggccctcagctgcgttggagccgccgtggcccttcatcctgaa
tcttttttcggcaaactctacagagcaccgctggacaccatggagtaccctgaggagcag
tacgtgtcggacgtcttgaactacatcgagcacggggacccgcaggtccgaggagccaca
gccatcctctgcgggacgctcatctgctccgtcctccgcaggtgccgcttccacgtggcg
gcctggatgggcgccgtcagagcccggacaggaaatgcgttttccctggcggactgcatc
cccctgctgcagaaggctttgaaggacgagtcctcggtgacctgcaagttggcttgtgca
gctgtgaggctctgcgtcgtgagcctctgcagcagcagctacagtgcgtgggggctgcag
ctcatcaccgacttgctggccctgcggagcagcgcctactggctggtgaggacggagctt
ctggagaccgtggcagagatcgacttcaggttggtgagctttctggaggccaaagcagaa
acgctgcacagaggggcccatcactacacagggcttttaaaactgcaagagcgggtgctc
aataatgttgtcatctatctgcttggagatgaagaccccagggtgcggcatgttgctgcc
gcttcgttgatgaggctcgtcccaaagctgttttacaagtgtgaccaaggacaggctgac
cccgtggtggccgtggcgagagaccagagcagcgtgtatctgacgctcctcatgcacgag
acgcagcctccgtcccacttctccgtcagcaccgtaaccagaatttatagaggctataac
ctgctaccaagcatcacagatgtcactctggaaaataacctctcgagagtcattgcagcc
gtttctcatgaactgatcacatcgaccacgagagcgctcacatttggatgctgtgaagct
ctgtgtctactttcaactgccttcccagtttgcatttggagtttaggttggcactgcgga
gtgcccccactgagcgcctcagacgagtccaggaagagctgcaccgtggggatggtcacg
atgatcctgaccctgctgtcctcagcctggttcccgctggatctctctgcccaccaggat
gctctgattttagccgggaacttgctggcagccagtgcccccaggtctctgaggagttca
tggacctctgaagacgaggccagcacggcagccaccaaacaggaggaggtgtggccagcc
ctgggtgaccggaccctggtgcccatggtggagcagctcttctcccacctgctaaaggtc
atcaacatctgcgcacacgtcctggacgaggtggctcccggacctgcagtgaaggcagcc
ctgccatctctcacaaaccccccttctctgagcccaatccgacggaagggaaaagagaag
gagccggtagagcaggcgtctgtgcccgtgagtcccaagaaaggcggtgaggccagtcca
gcctctcgaccacctgaaacctcagggcctgtcgccgcaaacaagtcctcgtcactgggg
agcttctgtcacctgccttcttacctcaaactgcacgacgtcctgaaagccactcacgcc
aactacaaggtcaccttggatcttcagagcagtagtgagaagtttgggggttttctgcgc
tctgccttggacgttctgtctcagattctggagctggcgacgctgcaggacattgggaag
tgtgttgaagagatcctgggatacctgaagtcttgcttcaatcgagagccgatgatggcg
accgtgtgtgttcagcagttgctgaagactctgttcgggacaaacctggcctcccagtct
gacagcctgtcttcccaccccagcaagtcgcagggccgagcgcagcgcctcggctcctcc
agtgcacgccccggcttgtaccactactgcttcatggcgccctacacccacttcacccag
gccttggcggacgccagcctgcggaacgtggtgcaggcagagcaggaccaggacacctca
gggtggtttgacgtcctccagaaagtgtcatcccagctgaagacaaacctcaccagcgtc
acaaagaaccgagcagacaagaatgctattcataatcacattcgcttattcgagcctctt
gttataaaagctttaaaacagtacacgaccacgacctccgtgcagttgcagaagcaggtg
ttggacttgctggcgcagctggttcagctccgggtcaactactgccttctggattcagac
caggtgtttattggatttgtgctgaagcagtttgaatacattgaagtcggtcagttcagg
gagtcagaggcaatcatcccaaacatctttttcttcctggtattactgtcttacgagcgt
taccactcaaaacagatcatcggcatccctaaaatcatccagctctgtgacggcatcatg
gccagcgggaggaaggcggtgacgcacgccatacccgccctgcagcccatcgtccatgac
ctcttcgttttaagaggaaccaataaggctgatgcaggaaaagagctggaaacccagaaa
gaggtggtggtgtccatgttactgagactcatccagtaccatcaggtgctggagatgttc
acgctggtcctgaggcagtgccacaaggagagcgaggacaagtggaagcggctgtctcgg
caggtggccgacgtcattctcccgatgctggccaagcagcagatgcacattgattctcat
gaagcccttggagtgctgaacacgctgtttgagattttggccccctcctccctccgcccc
gtggacatgcttttacggagtatgttcgtcaccccagacaccctggggtcggtgagcgct
gtccagctgtgggtgtcgggcatcctggccatcttgcgggtgctgatttcccagtcgacc
gaagacattgttctgtcccgcatccaggagctctccttctctccgcacttagtgtcctgt
ccgacaatcagtaggttaagagacggggacagcacttcagcactggaggaacacagtgaa
gggagacaaacgaagaatttgccagaagaaacgtttgccaggtatgctccgcgtctagtc
tgtggcctcgggctctcatgtggtgttgaatctgctcgatcaggtcctgaatcagaccct
ctgaagattgcccagagtagtgggtgggtgcgttgcctgcagagaattggaaaacgtagg
aagacccacttctgctcctccccactgtgtactgtcatccgggcaccgcaggcagtagga
tcccgctccctgccggtggaccgctctgccgtgctcacctccttatactgt
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integrated database retrieval system
