Odocoileus virginianus (white-tailed deer): 110136992
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Entry
110136992 CDS
T10722
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110136992 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ovr03019
]
110136992 (MTREX)
03041 Spliceosome [BR:
ovr03041
]
110136992 (MTREX)
03009 Ribosome biogenesis [BR:
ovr03009
]
110136992 (MTREX)
03016 Transfer RNA biogenesis [BR:
ovr03016
]
110136992 (MTREX)
Enzymes [BR:
ovr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110136992 (MTREX)
Messenger RNA biogenesis [BR:
ovr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110136992 (MTREX)
Spliceosome [BR:
ovr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110136992 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
110136992 (MTREX)
Ribosome biogenesis [BR:
ovr03009
]
Eukaryotic type
Pre-60S particles
Helicases
110136992 (MTREX)
Transfer RNA biogenesis [BR:
ovr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110136992 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110136992
NCBI-ProteinID:
XP_020748793
UniProt:
A0A6J0XG34
LinkDB
All DBs
Position
14:44909398..45001773
Genome browser
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKEKGKWKGPPGSAEKAGKCFDGKSQSESTNVG
KTKRDADFEGADEPIFGKKPRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKS
DEKGEMQVVPVLVHLLSAVSSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgctttcggggatgagctcttcagcgtgttcgaggacgactcgaccacggct
cccggagccaaaaaagacaaggaaaaggagaaggggaaatggaaggggccgccagggtct
gcagaaaaggccggaaaatgttttgatggtaaatcacaatcagagtcaactaatgttgga
aaaaccaagagagatgcagactttgagggtgctgatgaacctatttttggaaagaaaccc
agggtggaagagtcaataactgaagatttaagtttggctgacctgatgcccagagtcaag
gtacagtcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaa
gattatctaccactgaaacctcgagttggaaaagctgcaaaggagtatccattcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtgtct
gcacatacatcagcaggaaaaactgtttgcgctgaatatgccattgcattggcgctaagg
gaaaaacaacgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgt
gaaatgtatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcct
acagcatcctgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgtcgtatgggaagaaactattattttgcttcctgataacgttcactatgtc
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccacttacat
aaacagccttgtcacgtaatttacacagattatcggcctactccattacagcactatatt
tttccagccgggggagatggcctgcaccttgttgttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcgaaaaggaggaacaaaaggtccatcaaacgtattcaaaattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaagattgtgaa
gcttatgcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggtt
gaagaagttttcagtaatgcaattgactgcttgtctgatgaagacaaaaagctccctcag
gttgaaaatgtacttcctctcttgaaacgggggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattaataaaggccttattt
gccactgagacttttgctatggggattaacatgccagctagaactgttttatttacaaac
gcccgaaaatttgatgggaaggattttcgatggatttcctctggtgaatatattcagatg
tctggtcgtgctggaaggaggggaatggatgatagaggaattgtaattcttatggtagat
gaaaagatgagcccaacgattggaaaacaacttcttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagagaaggtgaagaactcagaagaacagtataataaaatagtaataccaaatgaa
gaaagtgtagtcatctactacaagattagacagcagcttgccaaattgggtaaagaaatt
gaagaatacattcacaaaccgaaatactgcttaccatttctacaaccaggtcgtttggta
aaggtgaagaatgaaggagatgattttggttggggtgtagtggtgaatttctcaaagaaa
tcgaatgttaagcctaattctggtgaactggatccgttatatgtagtagaagtacttctg
cgctgtagcaaagaaagcttgaaaaattctgctactgaggctgcaaagccagctaaatct
gatgagaaaggagagatgcaggttgttccggtcctggtgcacctcctgtctgctgtcagc
agcgtcaggctctacatccctaaggacctccggccgctggacaacaggcagagcgttctg
aagtcaatacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctatt
gatgacatgggcattcaggatcaaggattgaaaaaagttatccagaaagtagaggccttt
gagcatcgaatgtattctcatcctcttcacaatgatccaaatttggaaactgtgtataca
ctttgtgaaaagaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaag
aaagcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacatcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgaccta
tctgcagaacaagcaacagcactactgagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagc
tcatttaaacctcacttaatggatgtagtatacacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcttg
gaagaactacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggag
aataaatttgcagaaggaatcaccaaaatcaagagagatattgtgtttgccgccagcctc
tacttataa
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