Odocoileus virginianus (white-tailed deer): 110137549
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Entry
110137549 CDS
T10722
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04120
Ubiquitin mediated proteolysis
ovr04137
Mitophagy - animal
ovr04141
Protein processing in endoplasmic reticulum
ovr05012
Parkinson disease
ovr05014
Amyotrophic lateral sclerosis
ovr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110137549 (PRKN)
04120 Ubiquitin mediated proteolysis
110137549 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
110137549 (PRKN)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
110137549 (PRKN)
05014 Amyotrophic lateral sclerosis
110137549 (PRKN)
05022 Pathways of neurodegeneration - multiple diseases
110137549 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ovr04131
]
110137549 (PRKN)
04121 Ubiquitin system [BR:
ovr04121
]
110137549 (PRKN)
03029 Mitochondrial biogenesis [BR:
ovr03029
]
110137549 (PRKN)
Enzymes [BR:
ovr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
110137549 (PRKN)
Membrane trafficking [BR:
ovr04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
110137549 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
110137549 (PRKN)
Xenophagy
Other xenophagy associated proteins
110137549 (PRKN)
Ubiquitin system [BR:
ovr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
110137549 (PRKN)
Mitochondrial biogenesis [BR:
ovr03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
110137549 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR_2
IBR_1
IBR
Rad60-SLD
Rcat_RNF216
Motif
Other DBs
NCBI-GeneID:
110137549
NCBI-ProteinID:
XP_070317607
UniProt:
A0ABM4HPW9
LinkDB
All DBs
Position
34:5591923..6801112
Genome browser
AA seq
458 aa
AA seq
DB search
MMKVFVRFNSNHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLCVIFAGKELRNDLTVQSC
DLDQQSIIHIVLRPRRKGPEGHTPRRRSDREPQSLTRVDLSGSVLPADSVGLAVILQDGE
ESGASSAPGPAGRPTYNSFYVYCKGPCQGVQPGKLRARCTTCQQGTLTLAQGPSCWEDVL
IPNRMSGECQSPNCPGTRAEFFFKCGAHPTSDKETSVALNLITTNSRDISCITCTDIRSP
VLVFQCTHRHVICLDCFHLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRIL
GEEQYNRYQHYGAEECVLRLGGVLCPSPGCGAGLLPEPGQRKVTCEPAHGLGCGFVFCRD
CKEPYHEGDCGAVIEASGAVSQAYRIDEKAAEQARWEEASKETIKKTTKPCPRCHAPVEK
NGGCMHMKCPQPQCQLQWCWNCGCEWNRACMGDHWFDM
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaagtgtttgtcaggttcaactctaaccacgggttcccagtggaggtcgattct
gacaccagcatcttccagctcaaggaggtggttgctaagcgacagggggttccggctgac
cagctgtgtgtgattttcgcagggaaggagcttcggaatgacttgacagtacagagctgt
gacctggaccagcagagcatcattcacattgtgctgagaccccggagaaaaggcccagag
gggcacacacctcggaggcgctccgacagggagccccagagcctgactcgcgtcgacctc
agcggctcggtgctgccggccgactcggtgggcctggctgttatcctgcaggacggcgag
gagagcggcgcctcgtcagcccccgggccagcaggtagaccgacctacaacagcttttat
gtctactgcaaaggcccgtgtcaaggagtgcagccgggaaagctcagggcgcggtgtacc
acctgccaacaaggaacgctcaccttggcccagggtccttcttgttgggaagatgtctta
atcccaaaccgaatgagtggtgaatgccagtctccaaactgccccgggactagagcagaa
tttttctttaaatgtggagcacacccgacctctgacaaggagacgtcagtagctttgaac
cttatcacaacaaacagtcgagacatcagctgcataacgtgtacggacatcaggagcccc
gtcctggttttccagtgcacccaccgccacgtgatctgcttagactgtttccacctgtac
tgtgtgaccagactcaatgaccggcagtttgtccacgaccctcagcttggctactctctg
ccgtgtgtggctggctgtcccaactccttgattaaagagctccatcacttcaggattctt
ggagaagagcagtacaaccggtaccagcattacggggcggaggagtgcgtgctgcggctg
ggaggcgtgctctgccccagcccgggctgcggggcggggctgcttccagaaccgggccag
cggaaggtcacctgcgaaccggcccacggcctggggtgcgggttcgtcttctgccgggac
tgtaaggaaccgtaccacgaaggtgactgcggcgccgtgatcgaagcctcaggagcagtc
agtcaggcctacagaatcgatgagaaggcagcagagcaggcccggtgggaggaagcctcc
aaagagacaatcaagaagaccaccaagccctgtccccgctgccacgcgcctgtagaaaaa
aacggaggatgcatgcatatgaagtgcccgcagccccagtgccagctccagtggtgctgg
aactgcggctgcgagtggaaccgcgcctgcatgggggaccactggttcgacatgtag
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