Odocoileus virginianus (white-tailed deer): 110138046
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Entry
110138046 CDS
T10722
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X3
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04612
Antigen processing and presentation
ovr05145
Toxoplasmosis
ovr05152
Tuberculosis
ovr05164
Influenza A
ovr05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
110138046 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
110138046 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
110138046 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
110138046 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
110138046 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ovr01001
]
110138046 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ovr04054
]
110138046 (CIITA)
Enzymes [BR:
ovr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110138046 (CIITA)
Protein kinases [BR:
ovr01001
]
Serine/threonine kinases: Other
TAF1 family
110138046 (CIITA)
Pattern recognition receptors [BR:
ovr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
110138046 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
LRR_Zer-1
AAA_16
Motif
Other DBs
NCBI-GeneID:
110138046
NCBI-ProteinID:
XP_020750440
UniProt:
A0A6J0XLQ6
LinkDB
All DBs
Position
33:9200289..9256806
Genome browser
AA seq
1129 aa
AA seq
DB search
MRCLAPRPAGSYLPEPQGGGQCSTMELGPLEGSYLELLNSSADPLQLYHLYDRMDLTGEE
EIELCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIAELDQYVFQDTQLEGLSRDIFI
EHIGLEEMISESVEVLEEAGQKSQKRPFPEELPADLKHRKLAEPLTMPVVTGTFLVGPVS
DSLAQPCPPPPALFNTEPASSQTRLKDPAPPSSSLLSCLSLPAGSIQILPTLSTLPQGLW
PISGTGTGVSSILIYQGEMPPASQTPPSSDPAVQSLPKSPDRPGSASPFAPSAADLPSMP
EPALTSRANLTEDEMSPTKCPAADGASSKLPKWPESVEQFCQSLRDKYQAQPAGPEGTLV
EMELVRVRLEKSSGKSQERELATLDWAERQPAQGGLAEVLLAASDRRQPRETRVITVLGK
AGHGKSHWARAVSRAWACGQLPQYDFVFCVPCHCLDRPGTSYRLQDLLSSLGPQPLPVDD
EVLSYIVRRPNRVLLILDAFEELEAHDGSLHSAGGPGSAEPRSLRGLLAGLLQRKLLRGC
TLLLTARPRGRLAQSLSKADALFEVAGFSAQQAETYVRRYFESEGTAEHQERALALLRAR
PFLLSHSHSPTVCRAVCQLAEALLQQSGEAQLPSTLTGLYVGLLGPAARDSPPGALEGLA
RLAWELGRAHQSGLKEDRFPSAEARAWAVAQGWLRPTPGAPETDLAFSSFLLQCFLGAVW
LALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLVGLVFQPRAGCLGALAGPAASAS
ADRKQKVLTRYLKRLQPGTLQAGRLLELLHCAHEALDPGLWQHVVQGLPARLSFLGTRLT
PPDTDVLGRALEAAGRDFSLDLRSTGVDPSGLGSLVGLRCVARFRAALSDTVELWESLQE
SGEAKLLRAVEEKFTIEPFKAKSMKDVEDLGNLVQIQRTRSSSEEAAGELPAVRDLKKLE
FALGPILGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGVAQLATTFPQLKALETLN
LSQNNITDVGACKLAEALPALAASLLRLSLYNNCICDSGAESLAHVLPDMVSLQMLDVQY
NKFTAAGAQQLAAGLKKCPQVKTLAMWTPTIPFGVQEHLQQLDPRIILR
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgcctggctccacgccctgccgggtcctacctgccagagccccaaggtggtgga
cagtgctcaaccatggagctggggcctctagaaggcagttacttagaacttctcaacagc
agtgctgaccctttgcagctctaccacctctacgaccggatggatctgacaggagaagaa
gagatagagctctgctcagaacctgacacagacaccatcaactgcgaacagttcagcagg
ctgttgtgtgacatggaaggtgacgaagagaccagggaggcttatgctaatatcgcggaa
ttggaccagtacgtcttccaggacacccagctggagggcctgagcagagacattttcatc
gagcacataggattggaagagatgatcagcgagagtgtggaggtgctggaggaagcaggg
cagaaaagtcagaaaagacccttcccagaggaactgcctgcggatctgaagcaccggaag
ctagctgagcccctcaccatgcccgtggtgactggcactttcctggtggggccagtgagc
gactccttggctcagccctgcccgccgcctcctgctctgttcaacacggagccagcatcc
agccagacccggctgaaggacccggcgcccccttccagttccttgttgagctgcctgagt
ctccccgcgggatccattcagattctccccactctctccactctgccccaggggctctgg
ccgatctcagggactgggacaggggtctccagtatactcatctaccaaggtgagatgccc
ccagccagccaaacacccccgtccagcgaccctgctgtccagagccttcccaagtcccca
gaccggcccggctccgccagcccctttgccccgtctgctgccgacctccccagcatgccc
gaaccagccctgacctcccgtgcaaacctgacagaggatgagatgtcccccaccaaatgc
ccggcagctgacggggcctccagcaaacttcccaagtggcctgagagcgtggagcagttc
tgccagtcactacgggacaagtaccaggcccagcccgccggcccggaaggcaccctggtg
gagatggagctggtgagggtgaggctggagaagagcagcgggaagagccaggagagagag
ctggccaccctggactgggcagagcggcagccggcccaagggggtctggccgaggtgctg
ctggctgcgagcgaccgccggcagccgcgtgagacgcgagtgatcactgtactgggcaaa
gcggggcacgggaagagtcactgggcccgggccgtgagccgggcctgggcctgcggccag
ctgccacagtacgactttgtcttctgcgtcccctgtcactgtttggaccgtccggggacc
tcctaccgcctgcaggatctgctgtcctccctgggcccgcagccgctgccggtggacgac
gaggtccttagttacatcgtgaggaggcccaaccgtgtcctgctcatcctggatgcattt
gaggagctggaagcccacgacggctccctgcacagcgcagggggccccgggtcggcagag
ccccgctccctccgggggctgctggcaggcctcctccagcgcaagctgctgcggggctgc
accctgctgctcacagcccggccgcggggccgcctggcccagagcctgagcaaggccgat
gccctgttcgaggtggccggcttctcggcccagcaggctgagacctatgtgaggcgttac
tttgagtcagaggggaccgccgagcaccaagagagggccctggcgctccttcgggcccgg
ccattcctcctgagtcacagccacagccccaccgtgtgccgggccgtgtgccagctcgcg
gaggccctcctgcagcagagtggtgaagcccagctgccctccaccctcacgggcctctac
gtgggcctgctaggcccagcagcccgcgacagccccccgggggccctggaaggactggcc
aggctggcctgggagctgggccgtgcgcaccagagtggcctgaaggaggaccgcttccca
tcggcggaggcgagggcctgggccgtggcccaaggctggttgcggcccaccccgggggcc
ccggagaccgacctggccttctccagcttcctcctgcagtgcttcctgggggccgtgtgg
ctggctctgagcggcgaaatcaaggacaaggagctgccgcagtatctggccttgaccccg
aggaagaagcggccctatgacaactggctagagggcgtgccacgcttcttggtcggactg
gtcttccagcctcgcgccggctgcctgggggccctggcggggccggcggcctccgcgtcg
gcggacaggaagcagaaggtgctcacgcggtacctgaagcggctgcagcccgggacgctg
caggcggggcggctgctggagctgctgcactgcgcccacgaggcgctggaccccgggctc
tggcagcacgtggtgcaggggctcccggcccgcctctccttcctgggcacgcggctcacg
cctcccgacaccgacgtgctgggccgcgccctggaggcggccggccgagacttctccctg
gacctccgcagcactggcgtcgacccctccggattggggagcctcgtgggactccgctgt
gtcgcccgtttcagggctgcgttgagtgacactgtggagctgtgggaatccctgcaggag
agtggggaggccaagctactccgggcggtggaggagaagttcaccattgagcctttcaag
gccaagtccatgaaggatgtggaagacctcggcaatctcgtgcagatccagaggacaaga
agctcctctgaagaagcagctggggagctccctgctgtccgagacttaaagaagctggag
tttgcgctgggccccatcttgggcccacaggtttttcctaaactggtgaagatcctcgag
gcctttacttcccttcagcacctggacctggactcactgagcgagaacaagatcggggac
gagggtgtcgcccagcttgccaccaccttccctcagctgaaggctctggagacactcaac
ttgtcccagaacaacatcaccgacgtgggtgcctgcaagctggccgaggctctgcccgcg
ctggccgcgtccctcctcaggctgagcctgtacaacaactgcatctgcgactcgggagcc
gagagcctggcgcacgtgcttccggacatggtgtccctccagatgctggatgtccagtac
aacaagttcacagccgctggggcccagcagcttgccgctggcctgaaaaagtgccctcag
gtgaagacactggcgatgtggacgcctaccatcccctttggcgtccaggagcatctgcag
cagctggaccccagaatcatcctgagatga
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