Odocoileus virginianus (white-tailed deer): 110140033
Help
Entry
110140033 CDS
T10722
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr04512
ECM-receptor interaction
ovr04514
Cell adhesion molecules
ovr04820
Cytoskeleton in muscle cells
ovr05144
Malaria
ovr05205
Proteoglycans in cancer
ovr05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110140033 (SDC1)
04514 Cell adhesion molecules
110140033 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110140033 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
110140033 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
110140033 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
110140033 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ovr04131
]
110140033 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ovr04090
]
110140033 (SDC1)
00535 Proteoglycans [BR:
ovr00535
]
110140033 (SDC1)
Membrane trafficking [BR:
ovr04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
110140033 (SDC1)
CD molecules [BR:
ovr04090
]
Proteins
110140033 (SDC1)
Proteoglycans [BR:
ovr00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
110140033 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Motif
Other DBs
NCBI-GeneID:
110140033
NCBI-ProteinID:
XP_020753950
UniProt:
A0A6J0XXF0
LinkDB
All DBs
Position
2:74878502..74883693
Genome browser
AA seq
284 aa
AA seq
DB search
MPPEDQDGSGDDNDNFSGSGAGALPDITSSQTPSTWKDLGPVTTTATAPEPTSPDAIAAS
TTVLPTREQPEGGGPVLLAEAGPGLTTQEKEATHPPSKTTLHPTTHGVSTARATTVPGPA
TSHPHRDVQPEHHETSAPTGRGHLEPHTPHVGDGGPSATEKAAEGDPSTQVPVVEGSGEQ
DFTFDVSGENAAGAAVEPGSRNGPPGDPEATGATGASQGLLDRKEVLGGVIAGGLVGLIF
AVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgccccccgaagatcaggatggctctggggatgacaatgacaacttctctggctcgggc
gcaggtgctctgccagatatcacctcgtcacagacaccctccacctggaaggacctgggg
cccgtgacgaccacagccacggctccagagcccaccagcccagacgccatcgctgcctcc
accaccgtcctgccaaccagagagcagcctgaggggggtgggccggtgctcctggcagag
gcggggcctggcctcaccacccaggagaaggaggccacccacccacccagcaagaccacg
ctgcacccgaccactcacggggtgtccacagccagagccaccacagtcccaggacctgcc
acctcccatccccacagggacgtgcagcccgagcaccatgagacctcagctcccacaggc
cggggccatctggagccgcacacgccccacgtgggggatggaggaccttctgccactgag
aaggcggccgagggggacccctccacccaggtcccagtggtagagggctctggggagcag
gacttcacctttgacgtgtccggggagaacgcagctggggccgcggtggaacctggctca
cggaacgggcccccgggggatcctgaggccacgggggctacgggggcctcgcagggcctc
ctggaccggaaggaagtgctgggaggggtcattgctggaggcctcgtggggctcatcttt
gccgtgtgcttggtgggtttcatgctgtaccggatgaagaagaaggacgagggcagctac
tccttggaggagccaaaacaagccaacggcggggcctaccagaagcccactaagcaggag
gagttctacgcctga
DBGET
integrated database retrieval system
