Odocoileus virginianus (white-tailed deer): 110141205
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Entry
110141205 CDS
T10722
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
ovr Odocoileus virginianus (white-tailed deer)
Pathway
ovr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110141205 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ovr03041
]
110141205 (CDC40)
Spliceosome [BR:
ovr03041
]
Complex C
Other components
Step II factors
110141205 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
EIF3I
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_WDR41
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_ACSF4
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
110141205
NCBI-ProteinID:
XP_020755656
UniProt:
A0A6J0Y2Y3
LinkDB
All DBs
Position
19:complement(23783596..23826112)
Genome browser
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGGRCSLPAADSLMHLTKSSSDKPSLAVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSTKYIGSVEEAEKNQGLTVFETGQKKIEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctcgctgcttcttatggttcgggttcagggtccgaatcg
gactcggacagtgagggcgggcggtgttccctgccagccgcggattccctcatgcactta
actaaatcgtcttcggataagccctctctggcagtggcagtggactccgctccggaggtg
gcagttaaggaagatttggagactggagttcaccttgaccctgctgtcaaagaggttcag
tataatcctacctatgagaccatgtttgctcctgagtttggaccagaaaatcccttcaga
acccagcaaatggctgcccctagaaatatgctttctggatatgctgaaccagcccatatc
aatgattttatgtttgaacagcaaagaagaacttttgccacttatggttatgcattggac
ccttcattagataatcatcaagtgtctactaaatatattggttctgtagaagaagctgaa
aaaaatcaaggtttaactgtgtttgaaactggtcagaagaaaatagaaaagaggaaaaaa
tttaaagaaaatgatgcatctaatattgatggtttcttgggaccgtgggcaaaatatgtg
gacgaaaaagatgtagccaaaccttcagaagaagaacaaaaagaattggatgagattaca
gcaaagaggcagaagaaaggcaaacaggaagaagagaaacctggagaggaaaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcctatcttcacatacctcaggat
gttggtgttaatctgcggtcaactgtgccacctgagaaatgttatcttcccaaaaaacaa
attcatgtgtggtctggacacacaaagggtgtcagtgcagtcagattgtttcctctctct
ggccatttgttgctgtcttgttccatggactgtaaaattaagctatgggaggtttatgga
gacaggcgctgtctgcgaacatttattggtcacagtaaagctgttagggacatctgcttt
aacactgcagggacacagttcctcagcgcagcttatgacaggtatcttaagctctgggac
actgagacaggacagtgtatatcaaggtttacaaaccgaaaagtgccctattgtgtcaaa
tttaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataagaagatt
gtgcaatgggacattcgaagtggagaaattgtgcaggaatatgatcggcatttgggagct
gtcaacaccattgtttttgtcgatgagaataggagatttgtaagcacatctgatgataag
agcctaagagtttgggaatgggatatccctgtggatttcaagtatatagcagaacccagt
atgcactcaatgcctgcagtgactttgtctccaaatgggaaatggctagcgtgccaatca
atggacaaccaaatcttaatttttggagcacagaacagatttagattgaataagaagaaa
atttttaagggccatatggtagccggctatgcttgtcaagtagacttttcaccagacatg
agctatgtgatttcaggagatggaaatggaaagttaaacatttgggactggaagaccaca
aaactctacagtagatttaaagctcacgataaagtgtgtataggtgcagtgtggcatcct
catgaaacatctaaagtcataacttgtggttgggatggtctcattaaattgtgggattaa
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