Odocoileus virginianus (white-tailed deer): 110141344
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Entry
110141344 CDS
T10722
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
Ribosome biogenesis [BR:
ovr03009
]
Eukaryotic type
90S particles
Other 90S particles
110141344 (PDCD11)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
110141344
NCBI-ProteinID:
XP_070326202
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Position
7:7036767..7080128
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AA seq
1875 aa
AA seq
DB search
MAAMEESFPRGGTRKTHKSEKTFQQSVEQDNLFDISTEEESTKRKKIQKEPAKTKKLKVE
TRESSKFVREKFEILNVESLCEGMRILGCVKEVNELELVISLPNGLQGCVQVTEICDAYT
EKLNEQVAQEEPLQDLVGLPELFSPGMLVRCVVSSLDTTKGGKKNVMLSLNPKNVNKVLS
AETLKPGMLLTGTVSSLEDHGYLVDIGVNGARAFLPLQKAQEYIRQKNKGAKLKVGQYLN
CLIEEVKGSGGVVTLSIGHSEVSAATATEEQSWTLNSLLPGLVVKAQVQKVTPLGLTLKF
LSFFNGLVDFMHLDPKKAGTYFSNQQVRACVLCVHPRTRAVRLSLRPVFLQPGRPLTRLL
CPQLGAVLDDVPVQGFFGNAGATFKLKDGALAYARRSHLSNSKKTFKPEAFKPGNTHKCR
IIDYSQMDELALLSLRTSIIEAQFLWYHDIKPGALVKGKVLTIKPHGMVVKMGRQIRGLV
PTMHLADILIKNPEKKYHIGDEVKCRVLLCDPKAKKLMMTLKKTLVESKLPAITCYDDAK
PGLQTHGFILRVKDYGCIVKFYNDVQGLVPRHELSAEYVPDPESVFYAGQVVKVAVLNCE
PSKERMLLSFRLLSDPKQEYEGQNQKKKKAVSAGQLVDVKVLEKTKDGLKVAVLPHNIPG
FLPTAHLSDHVTNGPLLYHWLQTGDTLHRVLCLSVSEERILLCRKPALVSAVEGGQNPKS
FSEIHPGMLLIGFVKNIKDYGVFVQFPSGLSGLAPKAILSDKFVTSTSDHFVEGQTVVAK
VTNVDEEKQRMLLSLRLSDCTLGDLATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAE
MTPGMALDLEVQEVLEDGSVLFSEGPVPGLVLRASKYHRAGQELEPGQKKKAVILNVDML
KLEVHVSLCHDLVNRKAKKLKKGSDLQAVVQHLEESFAVASLVETGHLAAFSLTSHLNDT
FRFDSEKLQVGQGVSLTLQTTEPGVTGLLLAVEGPAAKRTMRQTRKDSETVDEDEEVDPA
LVVGTVKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPVGTSPTAKL
KVGKKVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSVLKEDGHTALNTHSVSPLE
KIKQYQSGQTVTCFLKKYNMVKKWLEVEIAPDVRGRIPLLLTSLSFKVLKHPDKKFRIGQ
ALKATVVGPAVSSKAFLSLSLIGPHKLKKGEVAMGRVVKVTPKEGLIISFPFGRLGRVSM
FHVSDSYSETHLEDFAPQQIVRCYVLSAASPVVTLSLRSSRTNPETKSKITDPEINSIED
LEEGQLLRGFVKSVQPSGVLVGLGPSVTGLAQHPHVSQHNQSKKAPYDRHLPEGKLLTAK
VLRLNHRESLVELSLLPGDTGKQDALSAPLGQPPPKQEGRETEAAERDHKGRAKEKQQQK
QKERRTRKGQEGAQPPSKDKKEPQKPQAKKLGKRPHPESSSEQEIGNKKQKKAALSEEDD
SGVEVYYREGEEEVEEMSVLPKEKLKKPAEAPRLQLSSGFVWDVGLDTLTPALPPHGESS
DSEEDEKPEQATQKKKSKKERELEKQKAEKELSRIEEALMDPGRQPESAEDFDRLVLSSP
SSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQES
LTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLL
RRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTLSAYPKRTD
VWSVYIDMIIKHGSQKEARDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVKA
KALEYVEAKSSMMDD
NT seq
5628 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatggaagaaagcttcccccgtggcggtacaagaaagacccacaaatcagag
aaaactttccagcaatcagttgaacaagacaacttatttgatatttctactgaagaggaa
tctaccaaaaggaaaaagatccagaaagagccagcaaaaacaaaaaagttgaaagttgaa
accagagaaagcagcaagtttgtcagagagaagtttgaaatccttaatgtggagtccctg
tgtgaggggatgcggattttgggttgcgtgaaagaggtaaatgaactggaactggtgatt
agtctccccaatggcctccaagggtgtgtgcaagtgactgaaatctgtgatgcttacact
gaaaaactgaatgagcaggtagcgcaagaagaacccctgcaggacctggttggcttgcct
gagctcttctcacctggaatgctggtgagatgtgtggtgagcagtctcgataccacaaag
gggggcaaaaagaatgtcatgctatcactgaaccccaaaaatgtcaacaaagtgctgagt
gctgagaccctgaaacctggcatgctgctcacgggcactgtgtccagcctggaagaccat
ggctacctagtggacatcggtgttaatggggccagagcttttctgccactgcagaaagcc
caggagtacattcggcagaagaacaaaggtgctaaattgaaggtgggtcagtacctgaac
tgcctcattgaagaggtgaagggcagtggaggagtggtcactctgtctattggtcactca
gaagtttctgctgccactgctactgaggagcagagttggaccctcaatagtttgctacca
ggactggtggtcaaagcgcaggtacagaaggtgactccgcttggccttacgcttaaattc
ctctcattcttcaatggcctggttgactttatgcacctggatcctaagaaagccggaaca
tatttctcaaatcagcaagtacgggcctgtgtcctctgtgtgcatcctcggaccagagct
gtgcggctgagcctgcgccccgtcttcctgcagcctgggcgcccactcacccggctcttg
tgcccgcagctaggagctgtgctggatgacgtgcccgtccagggcttttttggcaatgcc
ggggccacctttaagctgaaggatggtgctctggcctatgctcggcgcagccatctctcc
aattctaagaaaactttcaaacctgaggccttcaagccagggaacactcacaagtgtaga
atcatcgactacagccaaatggatgaactggccttgctctctctgcggacgtctattatt
gaagctcagttcctttggtatcatgacatcaaacctggggctttggttaagggcaaagtg
ctgaccataaagccacacggaatggtggtgaagatgggcaggcagatcaggggcctggta
cctaccatgcacctggccgacatccttataaagaatccggagaagaaataccacattggg
gatgaggtcaagtgccgggttttgctttgtgaccctaaagccaagaagctcatgatgacc
ctgaagaaaaccctggttgagtccaaacttcctgccattacctgctatgatgatgccaag
cctggtctgcagacgcacggctttatcctccgggtcaaggattacggctgcattgtaaag
ttctacaatgatgtgcagggactggtgcccaggcacgagctcagtgccgagtacgtccct
gacccagagagtgtcttttacgcgggccaggtggtgaaggttgcggtgctgaactgtgag
ccgtccaaggagaggatgctcttgtccttcaggctgttgagtgatcccaagcaagagtat
gaaggacagaatcagaagaaaaagaaagccgttagtgctgggcagttggtggatgtgaag
gttttagagaagaccaaagacgggctgaaggtggctgtcctgccccacaacatccccggc
ttcctccccacggctcatctgtcggaccatgtcaccaacggcccactgttgtatcactgg
ctccagacaggtgacaccctgcaccgggtcctgtgtctgagcgtgagtgaggagcggatt
ctcctttgcaggaagccagccttggtctctgcagtagaaggtggccagaatcccaagagc
ttctcagaaatccatcctggaatgctgctcattggttttgtgaagaacatcaaggactac
ggtgtgttcgtccagttcccctcaggtcttagtggactggcccccaaagctatcttgagt
gacaagtttgtgacctccacaagtgaccactttgtcgaggggcagacggtggttgcgaag
gtgaccaacgtggacgaggagaagcagcggatgttgctgtcactgcggctgtcggattgc
accctgggggacctggccacaaccagcctcctcctcctgagccagtgcctggaggagcgg
cagggcgtccggagcctcatgagcaaccgagactctgtgttgatccagactttggctgaa
atgacccctggaatggcccttgacctggaggtgcaggaggtgttggaagacggctctgtg
ctgttcagtgagggccccgtgcctggcctggtcctgagagccagcaagtatcatcgggca
gggcaggagctggaacctgggcagaaaaagaaggctgtaatcttaaacgttgatatgttg
aagttggaagtacatgtttccctctgccacgacttggtgaatagaaaagctaaaaagctg
aagaaaggcagtgacctccaggccgttgtgcagcacttggaggagtcctttgccgtcgcc
tccttggtagagactggccaccttgcagctttctccctgacctctcacctgaacgacacc
ttccgctttgactcagagaaattgcaggtggggcaaggcgtctccctaaccctccagacc
acagaaccaggagtgaccggtctcctcttagctgttgaggggccagctgctaagaggacc
atgagacagacccggaaggactcagagacagtcgacgaggatgaggaagtggatccagct
ttggtcgtagggactgtaaagaagcacaccctgtccattggggacatggtcacagggact
gtcaagtccattaagcctacgcatgtggttgtgaccctggaagatggcatcattggctgc
atccatgcctcccacattctagatgatgttccagtgggcacatctcctactgccaagctg
aaagttgggaagaaagtcactgcccgagtgattggcgggagagacatgaagaccttcaag
tttctcccaataagtcatcccagatttattcgaaccatcccagagctgagtgttcggcca
agtgtgctgaaggaggatggccatactgctctcaacactcactctgtaagccccttggag
aagattaaacagtatcagtctggtcagactgtgacttgcttcttgaagaagtacaacatg
gttaagaaatggctcgaggtagagattgctccagacgtccgagggagaattcccttgctg
ctcacttctcttagcttcaaggttctgaaacacccagataagaagttccggattggccag
gccctgaaggccactgtggttggcccagcagtttcctccaaggccttcttgtctctttca
ctcataggtcctcacaagctcaagaagggggaagtggccatgggccgtgtggtgaaggtg
actcccaaggagggcctgatcatctccttcccctttgggaggcttggaagagtcagtatg
tttcatgtgagtgactcctactcagaaacgcacctggaagacttcgccccacagcagatt
gtcaggtgttacgtcctgtctgctgcgagccctgtagtgactttgtcgctgagatcgtcc
aggacaaacccagagacgaaaagcaaaataacagatccagagattaactccatcgaggac
cttgaggaagggcagctcttgaggggcttcgtgaagtccgtgcagccgtccggcgtgctc
gtaggccttggcccctcagttacgggtttggcccaacacccgcacgtctcccagcacaac
cagtccaagaaagctccttatgacagacacctccccgaggggaagctgctcacagccaag
gtcctacgtctgaaccatcgggagagcctggtagagctgtcgcttcttcccggtgacact
gggaagcaggacgcgctttctgcccccctgggacagccacctccgaagcaagaggggcgg
gaaacggaggcagcggagagagaccacaaaggaagagcaaaggagaagcagcagcagaaa
cagaaagagaggagaactaggaaggggcaggagggggcgcagccacccagcaaggataag
aaagagccccagaagccccaggcaaagaagctgggcaagcggccgcaccccgagtccagc
agtgagcaggaaattgggaacaagaagcagaagaaagctgccctgtctgaggaggacgac
agtggcgtggaagtgtattaccgggaaggagaagaagaggtagaagagatgagcgtgttg
cccaaggagaagctgaaaaagccagcagaagcgccccggctgcagctgtcttctggcttc
gtttgggatgtgggtctggacaccctgaccccggccttgccacctcatggagagagctcg
gacagtgaggaggacgagaaaccagagcaagccacgcagaagaagaaaagcaagaaggag
agggagctggagaagcagaaggccgagaaggagctgtcccgcatcgaggaggcgctgatg
gatcctgggcgacagccggagtcggccgaggactttgaccgactggtgctgagctcgccc
agcagctccctcctgtggctgcagtacatggccttccacctgcaggccacggagattgag
aaggcccgggctgtggccgagagggcgctcaagaccatctccttcagagaggagcaagag
aagctgaacgtgtgggtggccctgctgaacctagaaaacatgtatggctcccaggagtca
ctgaccaaggtcttcgagcgggccgtgcagtacaatgagcctctcaaggtctttctccat
ctggctgacatttacaccaagtcagagaaattccaggaagctggtgaactctataaccgg
atgctgaagcgtttcaggcaggagaaagctgtctgggtcaaatacggcgcctttcttctg
cggaggggaaaggcggaggccagtcaccgtgtgatgcagcgagcccttgagtgcctgcct
aagaaagagcacgtggatgtcatcgccaagtttgcccagcttgagttccagctgggggat
gcagaacgtgccagggccatttttgagagcacactgagcgcctacccaaagcgcacggac
gtctggtcggtttacattgacatgatcatcaagcatggcagccagaaggaagcccgggac
atcttcgagcgggtcattcacctgagcctggcccccaagcgaatgaaattcttcttcaag
cgctacctggactatgagaagcaacacggctcggagaaggatgtgcaggcagtaaaggca
aaggccctggaatatgtggaggctaagagctctatgatggacgactag
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