Odocoileus virginianus (white-tailed deer): 110142874
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Entry
110142874 CDS
T10722
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ovr03000
]
110142874 (RC3H1)
04121 Ubiquitin system [BR:
ovr04121
]
110142874 (RC3H1)
Transcription factors [BR:
ovr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110142874 (RC3H1)
Ubiquitin system [BR:
ovr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110142874 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
110142874
NCBI-ProteinID:
XP_020757934
UniProt:
A0A6J0Y9D1
LinkDB
All DBs
Position
11:24316329..24391499
Genome browser
AA seq
1124 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWDQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILPEE
GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDPSYDTSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTELPPMPVTKPLQMVPRGSQLYSAQQADVYYQDPRGAA
PPFEPAPYQQGMYYPPSPQCMSRFVRPPPSAPEPGAPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYAREEMFRESPIPIEIPPAAVPPYVPEPRERYQQMEGYYP
VAPHPAQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGIRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKSINISDYGPYGTHGGWGGSAYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEREASTLAGQSQPPPPPPPKWPGMVSSEQLSLEL
HQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAEDLTLTFSDVPNG
SALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTSSSTP
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacagatttcctctcctgcccaatttgcactcagact
tttgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgaactcctcccagtgaactcagcattgctgcagctagtgggtgctcaggttcctgag
cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagtactactcagagtgttctgagtcgcccaatgcagaggaagctagtgacgctg
gtccactgccaactagtggaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccaacaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagccctaaagctggttctcctagccttagaagatggttctgctttgtctagaaaa
gtattggttctctttgtggtacaaagattggagccacggtttcctcaagcctctaaaact
agcattgggcatgttgtccagctcctttatagagcctcctgcttcaaggtcaccaaacgt
gatgaagactcttccttgatgcagctgaaagaagaatttagaacctatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctgtatggagaccaatctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagcgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaacattgaccctagtccagatgctcctcctcctacttgggaccagctcgaaaatggg
ttggttgctgtgcgtacagtggtacatgggctggttgattatatccagaaccacagcaaa
aaaggagcagatcaacagcagcctccgcagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcggggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcccaggagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttccggaagaa
ggggcagtggatctgcctagcagaaaaacccctgctctgccgaatgggattgtatcagca
gggaatacagtaacgcaactgattccacgagggacagaccccagctacgataccagtctg
aaaccaggaaagattgatcacctgagcagtagtgcccctgggtcccctcctgacctgcta
gaatcggtccctaagagtatttctgccttgcctgttaatccacatcctgtacctccaaga
ggaccaacagagctgccccctatgcctgtcactaaacctcttcagatggtgccgcgaggt
tctcagctctattcagcacagcaggctgatgtttattaccaggatcctcgaggagccgct
ccgccgtttgaaccagcaccttatcagcagggtatgtactatccgccatcaccacaatgt
atgtcccgttttgtccgacctccaccatctgctcctgaacctggtgctccctacttggat
cattatccaccatacctgcaagatcgtgtagtaaactcacagtatggcacacagccacaa
cagtacccacctatgtacccaccacactatgatggccgtcgagtataccctgctcagtct
tacgcaagagaggagatgttccgagaaagtcctatacccattgagattccacctgcagca
gtgccgccgtatgtaccagaacccagagagagataccaacagatggagggttactatcca
gtggctccacacccagctcagatcagaccttcgtacaacagagagcctccatacagtcgg
cttccgcctcctccccagccccatcctagtctagatgagctacatcgaaggcgaaaggaa
ataatggcacagctagaagaaaggaaggttatctctccacctccttttgcaccttcacca
acattgcctcctgccttccatcaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactccccctggtcctgtgacactattggctcc
tacattggaaccaaagatgcaaaacctaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaattagagaccagcgcttggaccttcagagaagagcagca
gaaaccagtgatgatgatctcatcccatttggagaccgaccaacagtatctcggtttggt
gccatttctcgaacttccaaaacgatatatcagggtgctggcccaatgcaggctatggca
cctcagggagctcccacaaaatctattaacatttcagactatggtccatatggaacccat
ggtggctggggaggttctgcatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggctagccatggaaaaccccttccgtct
gctgagcgggaacagctacgactggaattacagcagctaaaccatcaaattagccaacag
acccagctacgtggactagagagggaggcgagcaccctggcaggccagtcgcagcccccg
ccaccaccgcctccaaaatggcctggaatggtctcaagtgagcagctgagcttggaactg
caccaggtggaaagggaaattgggaagagaacccgggaactgagtatggagaaccagtgt
tctctggacatgaaaagcaaattgaatacaagtaagcaagcagaaaatggacaaccagaa
ccacaaaataaggttccagctgaggaccttacgttgacattcagtgacgtgcctaatgga
tcagcattgacacaagagaatatcagcctcctgtccaacaagaccagctctctgaacctg
tcagaggaccctgagggaggaggggacaataatgactcccagagatcaggagttacatcc
agttctactccctaa
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integrated database retrieval system
