Odocoileus virginianus (white-tailed deer): 110143022
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Entry
110143022 CDS
T10722
Symbol
CDK5RAP1
Name
(RefSeq) mitochondrial tRNA methylthiotransferase CDK5RAP1
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
ovr Odocoileus virginianus (white-tailed deer)
Brite
KEGG Orthology (KO) [BR:
ovr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ovr03016
]
110143022 (CDK5RAP1)
Enzymes [BR:
ovr01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
110143022 (CDK5RAP1)
Transfer RNA biogenesis [BR:
ovr03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
110143022 (CDK5RAP1)
Prokaryotic type
Methylthiotransferases
110143022 (CDK5RAP1)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
110143022
NCBI-ProteinID:
XP_020758177
UniProt:
A0A6J0Y937
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Position
9:complement(58377784..58441317)
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AA seq
589 aa
AA seq
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MHPLQCVLRVQRCLRRGPLASVSWLLFRTCRAHSSIPSSACPSPERPQEDGVGKDFSSRL
ATGPTFQDFLRSALVPPEKPSSSEMEDPPPYLTADELLGRQRRVYLETYGCQMNVNDTEI
AWSILEKSGYLRTNSLQEADVILLVTCSIREKAEQTIWNRLHQLKSLKSKRLRSRVPLRI
GILGCMAERLKEEILNREKMVDILAGPDAYRDLPRLLAVAESGQQAANVLLSLDETYADV
MPVQTSPSATSAFVSIMRGCDNMCSYCIVPFTRGRERSRPIASILEEVRKLSEQGLKEVT
LLGQNVNSFRDNSEVQFNNAVSTNLSRGFSTNYKAKQGGLRFAHLLDQVSRIDPEMRIRF
TSPHPKDFPDEVLQLIHERDNICKQIHLPAQSGSSRVLEAMRRGYSREAYVELIQHIRES
IPGVSLSSDFIAGFCGETEEDHLQTVSLLREVQYNIGFLFAYSMRQKTRAYHRLKDDIPE
EVKLRRLEELITVFREEATKVNKSFVGCTQLVLVEGPSKRSATDLCGRNDGNLKVIFPDV
EVEDVTDSGLRVRAQPGDYVLVKITSASSQTLKGHVLRKTTLKDSTAYC
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgcatcctttacagtgtgttctccgagtccagaggtgtctgcggcgggggcccttggcc
tctgtgtcctggctgctcttcaggacctgcagggcacacagcagtatccccagctctgca
tgtcccagtccagagaggccgcaggaggatggagttgggaaggatttcagctccaggctg
gccactggaccgacttttcaggattttttaaggagtgctttagttcctccagagaaaccg
tcttcttcagaaatggaggacccacccccgtatctcacggcagatgaacttttaggaagg
cagagaagagtctaccttgagacttatggctgccagatgaacgtgaatgacacagagata
gcctggtccatcttagagaagagtggctacctgcggaccaatagccttcaggaggctgat
gtgattctccttgtcacatgttctatcagggagaaggctgaacagaccatctggaatcgt
ttacatcagctcaaatccctgaagtccaaacggctccgctcccgagtacctctgaggatt
gggattctaggctgcatggctgagagactgaaggaggagatcctcaacagggagaaaatg
gtggatattttggctggcccagatgcctatagggaccttcctcgattgctggctgttgct
gagtcaggccagcaagctgccaatgtcctgctatctctggatgagacctatgctgacgtc
atgccagtccagacgagccccagtgctacctctgccttcgtgtctatcatgcgaggctgt
gacaacatgtgcagctactgcattgttcctttcacacgtggccgggagaggagtcggcct
attgcctccattctggaggaagtgaggaagctttctgagcaggggctgaaagaagtgaca
ctccttggtcagaatgttaatagttttcgggacaattcagaggtccagttcaacaatgca
gtgtccaccaacctcagtcgtggcttttccaccaactataaagccaagcaaggaggcctt
cgttttgctcaccttctggatcaggtgtccagaatagatcctgaaatgaggattcgtttc
acctctccgcaccctaaggactttcctgatgaggttctgcaactgatccatgagagggac
aacatctgtaaacagatccacctaccagcccagagtggaagcagccgtgtattggaggcc
atgcggagggggtattcaagagaagcttatgtggaattaattcagcatatcagagagtct
attccaggtgtgagcctcagcagtgatttcattgctggcttttgtggtgagacggaggaa
gatcaccttcagacagtgtctttgcttcgggaagttcagtacaacataggcttcctcttt
gcctatagcatgagacagaagacacgagcatatcacaggctgaaggatgatattcccgaa
gaggtaaaattaaggcgtttggaggaacttattactgtcttccgagaagaagcaacaaaa
gtcaacaaatcctttgtgggttgtacccaactggtgctggtggaggggcccagtaaacgc
tctgctactgacctgtgtggccggaatgatggaaaccttaaggtgatatttcctgatgta
gaggtggaggatgtcaccgactctgggctcagggttcgagctcagcctggggactatgtg
ctggtgaagatcacctcagccagttctcagacacttaaaggacatgttctccgcaagacc
actctaaaggactccacagcatattgctga
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